Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F03
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    91   6e-19
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    86   2e-17
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    31   0.97 
03_05_0161 + 21400580-21401695                                         30   1.7  
04_04_1540 - 34245246-34245797,34246904-34247157,34247989-34248577     29   3.0  
01_05_0630 - 23811576-23811728,23812473-23812561,23812644-238127...    28   5.2  
04_04_0387 + 24869594-24871480                                         27   9.0  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 51/126 (40%), Positives = 70/126 (55%)
 Frame = +3

Query: 75  GRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAP 254
           GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  ++       
Sbjct: 10  GRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIKIDIKRVPK 67

Query: 255 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKS 434
              + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR  A       
Sbjct: 68  KTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAK 127

Query: 435 LKVKAA 452
           LK  AA
Sbjct: 128 LKKTAA 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 45/109 (41%), Positives = 64/109 (58%)
 Frame = +3

Query: 75  GRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAP 254
           GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  ++       
Sbjct: 23  GRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIKIDIKRVPK 80

Query: 255 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 401
              + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 81  KTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -3

Query: 532 GFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 353
           G +VA+L R F A    +          A  FK+L    + R  L      +NL  S++C
Sbjct: 320 GEIVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 211 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 116
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>04_04_1540 - 34245246-34245797,34246904-34247157,34247989-34248577
          Length = 464

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
 Frame = +2

Query: 2   LFESTLFVLRRCKNVMPFARYVEPGXCRPGSRRSLKGKVSERGRRY*PNSCTG*WTRQWS 181
           L   +  +LR     +PF+R  +     P  RR L+  V+E  R    N   G     WS
Sbjct: 14  LLSLSFLLLRPASPPLPFSR--QQAASGPDRRRLLRVYVAELPRAL--NH--GLLDLYWS 67

Query: 182 T*ATD---PLKPTPSHKIPPQIRVHSPY 256
             A D   P    P H  P   R HSPY
Sbjct: 68  LPAADSRIPASSDPDHPPPRPPRAHSPY 95


>01_05_0630 -
           23811576-23811728,23812473-23812561,23812644-23812764,
           23812867-23812992,23813399-23813505,23813742-23813856,
           23815071-23815274
          Length = 304

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
 Frame = -3

Query: 559 RHKNNYFLAGFLVAFLVRTFF--AAALGIF-FLPKVPARAAFTFKLLNTAVLARFLL--- 398
           R  N+ +L G  + F +  +    A+LGI   LPK  A  A+   LL T   + + L   
Sbjct: 123 RTANSLWLDGRTIHFSINAWVLVVASLGILPILPKHIASKAYRLSLLGTICSSAYSLYVT 182

Query: 397 -------TRAAVNLNLS*SVICARF-SLFANFWAH*LSVHFSLSLASVHAFLTRRVGAVN 242
                    AA+   L   ++   F  L  +      +VH+ ++L  V   L   +  V 
Sbjct: 183 YGKPRAWNMAAIQPWLQSIIVAKDFVHLMFSLMMFTSNVHYKIALLPV---LCWALDHVA 239

Query: 241 AYLRRNFVRWSWFKRI 194
            +LRRNF R S ++++
Sbjct: 240 RFLRRNFARSSLYRQL 255


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +3

Query: 294 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGTFGK 473
           +EK+ + QW Q + + +K  ++    +  + A+  + NR R    K ++++ ARA T   
Sbjct: 501 SEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRMARANTMVM 556

Query: 474 K 476
           K
Sbjct: 557 K 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,866,606
Number of Sequences: 37544
Number of extensions: 331617
Number of successful extensions: 976
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)