Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F02
         (402 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   2.0  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   3.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   7.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   7.9  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 32  CKLRFQHVLQIVHPLCSVGGRGFRQPQPQA*ASAD 136
           C+ RF+    +VH  C       R P P   A+ D
Sbjct: 252 CRGRFRRRHHLVHHKCGGEEEAERAPAPAVRAAGD 286



 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 46  KAQLAGFPSSDHRPA 2
           +A  AG P  DHRPA
Sbjct: 295 RADGAGGPLHDHRPA 309


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 16  HLKENLQVALSTCSTNCSPSLLCWWP 93
           +L E+ + +L+TC+  CS   +  WP
Sbjct: 56  YLVEDEETSLATCNMLCSEPAI--WP 79


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +1

Query: 19  LKENLQVALSTCSTNCSPSLLCWWP 93
           + ENL++ L   S     S    WP
Sbjct: 211 INENLKMGLDIASITAQASSFVVWP 235


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +1

Query: 19  LKENLQVALSTCSTNCSPSLLCWWP 93
           + ENL++ L   S     S    WP
Sbjct: 211 INENLKMGLDIASITAQASSFVVWP 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,185
Number of Sequences: 336
Number of extensions: 670
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)