Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_F01
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 164 5e-41
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 157 6e-39
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 56 4e-08
06_01_0671 - 4899611-4899829,4900870-4901448 41 0.001
08_02_0677 - 19947277-19947342,19948121-19948502,19948573-19948925 31 1.2
08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448... 30 2.1
12_02_0757 + 22845825-22846032,22848331-22848498,22848929-228494... 29 4.9
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 28 8.5
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 28 8.5
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 28 8.5
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 164 bits (399), Expect = 5e-41
Identities = 78/163 (47%), Positives = 105/163 (64%)
Frame = +2
Query: 227 LLLGKTFPDFSANTTEGEINFHEWLGDKWGILFSHPSDFTPVCTTELARVLVLLPEFVKR 406
L +G T P+ ++T G+I H+++GD + ILFSHP DFTPVCTTELA + EF KR
Sbjct: 39 LTIGDTVPNLELDSTHGKIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKR 98
Query: 407 NTKVIGLSCDSVSSHLEWCKDIKSFAGCNEDEPFPYPIIEDEKRELANKLGMIDNDELDH 586
K++G+SCD V SH +W KDI+++ N YPI+ D RE +L M+D DE D
Sbjct: 99 GVKLLGISCDDVQSHKDWIKDIEAYKPGNR---VTYPIMADPSREAIKQLNMVDPDEKDS 155
Query: 587 KGMPLTARAVFIVDPNKKFXLSILYPATTGRNFDXILRILDSL 715
G L +RA+ IV P+KK LS LYPA GRN D ++R +D+L
Sbjct: 156 NGGHLPSRALHIVGPDKKVKLSFLYPACVGRNMDEVVRAVDAL 198
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 157 bits (382), Expect = 6e-39
Identities = 77/163 (47%), Positives = 101/163 (61%)
Frame = +2
Query: 227 LLLGKTFPDFSANTTEGEINFHEWLGDKWGILFSHPSDFTPVCTTELARVLVLLPEFVKR 406
L LG PD +TT G+I H+++GD + I+FSHP+DFTPVCTTEL+ + EF KR
Sbjct: 4 LTLGDVVPDLELDTTHGKIRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKR 63
Query: 407 NTKVIGLSCDSVSSHLEWCKDIKSFAGCNEDEPFPYPIIEDEKRELANKLGMIDNDELDH 586
K++G SCD V SH +W KDI+++ +PI+ D RE +L MID DE D
Sbjct: 64 GVKLLGFSCDDVESHKDWIKDIEAY---KPGRRVGFPIVADPDREAIRQLNMIDADEKDT 120
Query: 587 KGMPLTARAVFIVDPNKKFXLSILYPATTGRNFDXILRILDSL 715
G L RA+ IV P+KK LS L+PA TGRN +LR D+L
Sbjct: 121 AGGELPNRALHIVGPDKKVKLSFLFPACTGRNMAEVLRATDAL 163
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 55.6 bits (128), Expect = 4e-08
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Frame = +2
Query: 230 LLGKTFPDFSANTTEGE----INFHEWLGDKWGILFSHPSDFTPVCTTELARVLVLLPEF 397
L+G PDF A + + +++G K+ ILF +P DFT VC TE+ EF
Sbjct: 69 LVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEF 128
Query: 398 VKRNTKVIGLSCDSVSS 448
K NT+++G+S DSV S
Sbjct: 129 EKLNTEILGVSIDSVWS 145
Score = 35.5 bits (78), Expect = 0.042
Identities = 24/90 (26%), Positives = 41/90 (45%)
Frame = +2
Query: 446 SHLEWCKDIKSFAGCNEDEPFPYPIIEDEKRELANKLGMIDNDELDHKGMPLTARAVFIV 625
SHL W + + G + YP+I D + ++ G++ D+ G+ L R +FI+
Sbjct: 213 SHLAWVQTDRKSGGLGD---LKYPLISDVTKSISKSFGVLIPDQ----GIAL--RGLFII 263
Query: 626 DPNKKFXLSILYPATTGRNFDXILRILDSL 715
D S + GR+ D +R L +L
Sbjct: 264 DKEGVIQHSTINNLAIGRSVDETMRTLQAL 293
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +2
Query: 236 GKTFPDFSANTTEGE-INFHEWLGDKWGILFSHPSDFTPVCTTELARVLVLLPEFVKRNT 412
G P+F+ +G ++ ++ G + +++ +P+D TP CT + +F K
Sbjct: 121 GSAAPNFTLRDQDGRAVSLSKFKG-RPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGA 179
Query: 413 KVIGLSCDSVSSHLEWCKDIK 475
+VIG+S D +SH E+ K K
Sbjct: 180 EVIGISGDDAASHKEFKKKYK 200
>08_02_0677 - 19947277-19947342,19948121-19948502,19948573-19948925
Length = 266
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 574 VIVNHAELVGQLSLLVFNYRIRKWFVFIATSKRLNVLAPFQVRGY 440
V+V H EL L +F +R+ F A +KR NV RGY
Sbjct: 37 VVVAHGELGADLREALFGRAVREAFALPAEAKRRNVSTVGPYRGY 81
>08_02_0099 +
12343518-12343678,12344193-12344393,12344669-12344846,
12347201-12347463,12347596-12347874,12348045-12349182,
12349303-12349473
Length = 796
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 323 FSHPSDFTPVCTTELARVLVLLPEFVKRNTKVIGLSCD 436
F++ S +T V T LA+ LVL E R+ V+ SCD
Sbjct: 703 FTNTSPYTVVETMSLAKALVLFREVGLRHLLVVPKSCD 740
>12_02_0757 +
22845825-22846032,22848331-22848498,22848929-22849434,
22849890-22850151,22851708-22851942,22854240-22854496,
22854592-22854635
Length = 559
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 389 PEFVKRNTKVIGLSCDSVSSHLEWCKDIKSFAGCNEDEPFPY 514
P+F+ + L+CDSVSS C + AG N +P Y
Sbjct: 240 PDFINNGCYYVSLTCDSVSS--SNCGAAAAAAGANGAQPQRY 279
>03_06_0454 +
34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 314 GILFSHPSDFTPVCTTELARVLVLLPEFVKRNTKVIGLSCDSVSSHLE 457
G + S P +CT +L VL+P+ NT GL D + H++
Sbjct: 667 GKVASFPDMDPGMCTKDLELDNVLVPKETVANTPPTGLGTDHIHEHVD 714
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +1
Query: 247 SRLLCQHNRRRNKFSRVARR*VGYTVLSPIRLHPGLHNRIGSGARPSS 390
S L RRR SR A Y P R P H RIG+G P++
Sbjct: 4 SSLASSSYRRRIVQSRDAVSSPAYWSRLPARARPPAHTRIGAGVLPAA 51
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Frame = +2
Query: 233 LGKTFPDFSANTTEGE-----INFHEWLGDKWGILFSHPSDFTPVCTTE 364
+G T PD +GE ++ H K +LF P FTP C+ +
Sbjct: 6 VGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQ 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,907,061
Number of Sequences: 37544
Number of extensions: 368737
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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