Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_E24
         (831 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.3  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   3.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   6.9  

>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 639 HAMHVEMADEAYHIGPAPS 695
           H MH +M  E  H+G  PS
Sbjct: 365 HPMHHDMLPETMHMGMGPS 383


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 639 HAMHVEMADEAYHIGPAPS 695
           H MH +M  E  H+G  PS
Sbjct: 365 HPMHHDMLPETMHMGMGPS 383


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -2

Query: 722 FRCI*IALCGRCRPNVVSLICHFNMHSMSVGIRINSHCP 606
           F+C    +CGR      +L  H  +H     +R+   CP
Sbjct: 163 FKC---KICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCP 198


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 695 GRCRPNVVSLICHFNMHSMSVGIRINSHCPDS 600
           GRC     +  C F+ +  S+GI   ++C  S
Sbjct: 500 GRCDEECNTYACEFDGNDCSLGINPWANCTAS 531



 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 349 LSSFYQDKLRDYVCRQAP 296
           L +  QDKL DY C   P
Sbjct: 428 LDAICQDKLGDYACYCPP 445


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 726 LEVAKKSNSQAIHPGY 773
           ++V +K+    IHPGY
Sbjct: 1   MDVLQKNYDDGIHPGY 16


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,294
Number of Sequences: 336
Number of extensions: 3972
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)