Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_E24
(831 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 99 4e-22
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 46 7e-06
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 31 0.26
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 29 1.1
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 26 7.5
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 26 7.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 7.5
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ... 25 10.0
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 10.0
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 10.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 10.0
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 25 10.0
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce... 25 10.0
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 99 bits (238), Expect = 4e-22
Identities = 50/114 (43%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Frame = +3
Query: 477 NNIRYNHAQIKEKVQRTQISKVLIANRGEIACRVMRTAKKLGVRTVAVYSDADRHAMHVE 656
N ++ Q + + + +KVL+ANR EIA RV RTA +L + TVA+YS DR +MH +
Sbjct: 15 NTNPFSKLQDRSSLLGEKFTKVLVANRSEIAIRVFRTAHELSMHTVAIYSYEDRLSMHRQ 74
Query: 657 MADEAYHIGPA---PSTQSYLNASKILEVAKKSNSQAIHPGYGFLSENVEFCEK 809
ADE+Y IG +YL +I+ +AK++ + +HPGYGFLSEN EF K
Sbjct: 75 KADESYPIGKVGQYSPVGAYLAIDEIVSIAKRTGANLVHPGYGFLSENAEFARK 128
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 46.0 bits (104), Expect = 7e-06
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Frame = +3
Query: 525 TQISKVLIANRGEIACRVMRTAKKLGVRT-----------VAVYSDADRHAMHVEMADEA 671
T I+ +LIAN G A + +R+ +K T +A D +A ++ MAD+
Sbjct: 67 TVITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKFTVMATPDDLKVNADYIRMADQY 126
Query: 672 YHIGPAPSTQSYLNASKILEVAKKSNSQAIHPGYGFLSENVEFCE 806
+ + +Y N I+++A++ N A+ G+G SEN + E
Sbjct: 127 VEVPGGSNNNNYANVELIVDIAERMNVHAVWAGWGHASENPKLPE 171
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 30.7 bits (66), Expect = 0.26
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 602 SQFLCSSHDPTCYLPSVCYQYFADLCSLNFLFDLCMVVPY 483
S +CSSH PT L +D C L FL D+ ++PY
Sbjct: 155 SSNICSSHTPTQLLVDPD----SDCCLLRFLTDMMAIIPY 190
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +3
Query: 567 ACRVMRTAKKLGVRTVAVYSDADRHAMHVEMADEAYHIGPAPSTQSYLNASKILEVAKKS 746
A ++ + L + ++ S RH HV +++ + IG +P +Q N S L K S
Sbjct: 451 ATNTPQSDRSLDINDLSRSSSYSRHLSHVSLSNPDFAIG-SPMSQDSSNYSSPLHRRKAS 509
Query: 747 NSQAIHPGY 773
+S P +
Sbjct: 510 DSNFSDPRF 518
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +3
Query: 507 KEKVQRTQISKVLIANRGEIACRVMRTAKKLGVRTVAVYSDADRHAMHVEMADEAYHIGP 686
+E ++ SK+LI G + C +++ G R ++V D + + + +
Sbjct: 36 EETLKSAFSSKILIIGAGGLGCEILKDLALSGFRDLSV---IDMDTIDITNLNRQFLFNE 92
Query: 687 APSTQSYLNASKILEVAKKSNSQAIHPGYGFLSE-NVEF 800
+ + N + + + K+ S + P YG + + +EF
Sbjct: 93 SNIDEPKANVAASM-IMKRIPSTVVTPFYGKIQDKTIEF 130
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 663 DEAYHIGPAPSTQSYLNASKILEVAKKS 746
D++Y G PST +Y+N E+ KKS
Sbjct: 454 DKSYIDGVMPSTDTYMNEKTSDELDKKS 481
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +3
Query: 411 RLTLKMHYLRYLYRNSPLTTLQNNIRYNHAQIKEKVQRTQISKV 542
R+ +++Y + L RNS LQ+N RY+ + + K+ ++S++
Sbjct: 55 RIVTEVNYEQQL-RNSEKKLLQSNERYDLLEDERKLLENELSQI 97
>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 583 ELQRNWESGQWLFILMPTDMLCMLKWQMRLTTL 681
++QR W SGQ F+L P+D + RLT +
Sbjct: 70 QIQREWNSGQ--FVLEPSDEDVHTANERRLTEI 100
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 686 RPNVVSLICHFNMHSMSVGIRINSHCPDS 600
RPN ++ I FN S N CPDS
Sbjct: 402 RPNRIAEIGRFNCSSSGCDYATNVTCPDS 430
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 686 RPNVVSLICHFNMHSMSVGIRINSHCPDS 600
RPN ++ I FN S N CPDS
Sbjct: 322 RPNRIAEIGRFNCSSSGCDYATNVTCPDS 350
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 512 ESSKNTDQQSIDSKQRGDSMSGHENCKEIGSQD 610
ESS +++ S S + GDS S ++ E S+D
Sbjct: 203 ESSSDSESSSDSSSESGDSDSSSDSESESSSED 235
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 444 LYRNSPLTTLQNNIRYNHAQIKEKVQRT 527
+YR+S + LQ++I Y ++E +Q+T
Sbjct: 378 IYRDSQINILQDSITYVKNYMEESLQKT 405
>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 491 QPCTNQRESSKNTDQQSIDSKQRGDSMSGHENCKEIGSQDSGCLF 625
+PC ++ E+ SI + + + SG E CK GS+ + +
Sbjct: 248 EPCFDKLEAKLAHAMMSIPATKSFEIGSGREGCKVAGSKHNDLFY 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,193
Number of Sequences: 5004
Number of extensions: 59344
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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