Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_E24
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1039 + 25610200-25610538,25611022-25611143,25611243-256113... 139 2e-33
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 53 2e-07
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 52 7e-07
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 32 0.49
09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169... 30 2.0
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 29 3.4
01_06_1588 + 38474698-38477169 29 3.4
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988... 29 4.5
01_05_0608 - 23628100-23631486 29 6.0
>12_02_1039 +
25610200-25610538,25611022-25611143,25611243-25611390,
25611681-25611818,25612106-25612165,25612234-25612392,
25612714-25612912,25613156-25613260,25613339-25613475,
25613812-25614037,25614119-25614282,25614408-25614524,
25614622-25614864,25614959-25615054,25615270-25615287
Length = 756
Score = 139 bits (337), Expect = 2e-33
Identities = 61/99 (61%), Positives = 81/99 (81%)
Frame = +3
Query: 531 ISKVLIANRGEIACRVMRTAKKLGVRTVAVYSDADRHAMHVEMADEAYHIGPAPSTQSYL 710
+ KVL+ANRGEIACRVMRTA++LG+ TVAVYSDADR A+HV ADEA +GP P+ +SYL
Sbjct: 39 VEKVLVANRGEIACRVMRTARRLGIPTVAVYSDADRGALHVRAADEAVRLGPPPARESYL 98
Query: 711 NASKILEVAKKSNSQAIHPGYGFLSENVEFCEKCASEDI 827
NAS I++ A ++ ++AIHPGYGFLSE+ +F + C +E +
Sbjct: 99 NASAIVDAALRTGAKAIHPGYGFLSESADFAQLCKAEGL 137
>05_03_0359 -
12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 11/114 (9%)
Frame = +3
Query: 522 RTQISKVLIANRGEIACRVMRTAK---------KLGVRTVAVYSDADR--HAMHVEMADE 668
+T I VL+AN G A + MR+ + + ++ +A+ + D +A H+ +AD+
Sbjct: 219 KTPIHSVLVANNGMAAAKFMRSVRTWANDTFGSEKAIQLIAMATPEDLRINAEHIRIADQ 278
Query: 669 AYHIGPAPSTQSYLNASKILEVAKKSNSQAIHPGYGFLSENVEFCEKCASEDII 830
+ + +Y N I+E+A+++ A+ PG+G SEN E + ++ I+
Sbjct: 279 FVEVPGGTNNNNYANVQLIVEIAERTGVSAVWPGWGHASENPELPDALTAKGIV 332
>10_06_0102 +
10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 51.6 bits (118), Expect = 7e-07
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Frame = +3
Query: 531 ISKVLIANRGEIACRVMRTAKKLGVRT-----------VAVYSDADRHAMHVEMADEAYH 677
I VL+AN G A + MR+ + + T +A D +A H+ +AD+
Sbjct: 39 IHSVLVANNGMAAVKFMRSIRTWALETFGTEKAILLVAMATPEDLKINAEHIRIADQFVE 98
Query: 678 IGPAPSTQSYLNASKILEVAKKSNSQAIHPGYGFLSENVEFCEKCASEDII 830
+ + +Y N I+E+A++++ A+ PG+G SEN E + + II
Sbjct: 99 VPGGTNNNNYANVQLIVEIAERTHVSAVWPGWGHASENPELPDALKEKGII 149
>09_06_0176 +
21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 32.3 bits (70), Expect = 0.49
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +3
Query: 459 PLTTLQNNIRYNHA----QIKEKVQRTQISKVLIANRGEIACRVMRTAKKLGVRTVAVYS 626
P +NN+ Y++A +++V++ + +V +A R EI V + VRTV Y+
Sbjct: 555 PTDPAENNVAYDNALGTTSSRDRVEKAR--RVALARRPEILSYVRNRSIPGDVRTVLDYA 612
Query: 627 DADRHAMHVEMADE 668
D+D A V+ A E
Sbjct: 613 DSDGVAKAVKPAKE 626
>09_06_0038 -
20415363-20415883,20415917-20416596,20416858-20416911,
20417440-20417489,20417665-20417800,20419030-20419128,
20419411-20419676
Length = 601
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 464 DNTSEQYKVQPCTNQRESSKNTDQQSIDSKQRGD-SMSGHENC 589
++T E + PC + ESS D +S D G SMSG ENC
Sbjct: 286 EDTGELICLDPCIAESESS---DSESSDEDDPGRISMSGEENC 325
>03_01_0265 +
2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = -2
Query: 764 MYSLTVRLFSYFKNFRCI*IALCGRCRPNVVSLICHFNMHSMSVGIRINSHCPDSQFLCS 585
MY + + SYF F C + + G R ++ ++C F ++ + + + S +S L
Sbjct: 458 MYIIIPSVLSYFSKFECH-LTVSGEQRAALLKMVCFFLVNLILLRALVESSL-ESWILSM 515
Query: 584 SHDPTCYLPSVCYQYFADLCSLNFL 510
CYL SV + S +FL
Sbjct: 516 GR---CYLDSVDCKQIEQYLSPSFL 537
>01_06_1588 + 38474698-38477169
Length = 823
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 501 VHGCTLYCSEVLS-VDYFYKDSVNNAFLKSTAF 406
V GC C E+ + V + YKD V++ +LKS F
Sbjct: 366 VDGCKAACLELCNCVAFEYKDDVSDCYLKSALF 398
>04_03_0588 +
17595299-17596151,17597519-17597665,17598562-17598837,
17599108-17599805
Length = 657
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 235 VINYSVILLSHFLSVSYVHKEGPGDKRNLSIY 330
V ++ V+LL L + +G G K+NLSIY
Sbjct: 505 VYSFGVVLLELLLRKQPIFDDGTGTKKNLSIY 536
>01_05_0608 - 23628100-23631486
Length = 1128
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 681 GPAPSTQSYLNASKILEVAKKSNSQAIHPGYGFLS 785
GPAPS L +IL+++ S S + PG G LS
Sbjct: 539 GPAPSWVGALGNLQILDLSHNSFSGPVPPGIGSLS 573
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,186,829
Number of Sequences: 37544
Number of extensions: 328385
Number of successful extensions: 725
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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