Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_E23
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              32   0.005
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   4.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 32.3 bits (70), Expect = 0.005
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +3

Query: 303 LEEEDAEAMQQELKEAFRLYDREGNGYITTSTLKEILAA--LDDKLSNADLDGIIAEIDT 476
           L  +D  + +  +   F  YDR  NG +    L++      L++     +L  +I+  DT
Sbjct: 226 LMSQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDT 285

Query: 477 DGSGTVDFDEF 509
           DG G ++ +EF
Sbjct: 286 DGDGKLNVNEF 296


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 657 KLKEKN*IRTDFVYLVXMCLLFMYLHHVGHER 752
           K+K K+ +  + +     C LF+ + H  H R
Sbjct: 270 KIKRKHNVFVNNILAASACSLFVVIFHFAHPR 301


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -2

Query: 704 YKIDKIGTYLIFFFQFIQPC*YRIRFVLVLK 612
           + ++++G  +  +F F +PC   + F  +LK
Sbjct: 320 HHLNRLGREISTYFTFTRPCGITLTFHEILK 350


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 167 EDLHHSQHNGTAVR*LR 217
           E +HH  HNG   R L+
Sbjct: 20  ESVHHCHHNGVVHRDLK 36


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 273 DGFCNIASHFLEEEDAEAMQQELKEAFRLYDR 368
           +G   IA H   EED+  ++++ K    + DR
Sbjct: 484 EGIRFIADHTKREEDSTRVKEDWKYVAMVLDR 515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,409
Number of Sequences: 438
Number of extensions: 4295
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)