Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_E22
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    46   2e-06
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    44   8e-06
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    42   3e-05
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    27   1.3  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    27   1.3  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    27   1.3  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    27   1.3  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   7.1  
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr...    24   9.4  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 29/80 (36%), Positives = 36/80 (45%)
 Frame = +1

Query: 55  QAAAVAVAPYWPGLFAKALEGINVRXLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXX 234
           +AA V V P W  +FAKALEG +++ L+ NIGSG                          
Sbjct: 32  KAANVDVEPIWATIFAKALEGKDLKELLLNIGSGA--GAAPVAGGAAAPAAADGEAPAEE 89

Query: 235 XXXXXXXXXSDDDMGFGLFD 294
                    SD+DMGFGLFD
Sbjct: 90  KEEAKEEEESDEDMGFGLFD 109


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 44.4 bits (100), Expect = 8e-06
 Identities = 28/80 (35%), Positives = 35/80 (43%)
 Frame = +1

Query: 55  QAAAVAVAPYWPGLFAKALEGINVRXLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXX 234
           +AA V V P W  +FAKALEG +++ L+ NIGS                           
Sbjct: 32  KAANVDVEPIWATIFAKALEGKDLKELLLNIGSAA-AAPAAGGAGAPAAAAGGEAAAEEQ 90

Query: 235 XXXXXXXXXSDDDMGFGLFD 294
                    SD+DMGFGLFD
Sbjct: 91  KEEAKEEEESDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 42.3 bits (95), Expect = 3e-05
 Identities = 27/80 (33%), Positives = 34/80 (42%)
 Frame = +1

Query: 55  QAAAVAVAPYWPGLFAKALEGINVRXLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXX 234
           +A  V V P W  +FAKALEG +++ L+ NIGS                           
Sbjct: 32  KAGNVEVEPIWATIFAKALEGKDLKELLLNIGSA--GAASAPTAAGAGAAAPAEAAEEEK 89

Query: 235 XXXXXXXXXSDDDMGFGLFD 294
                    SD+DMGFGLFD
Sbjct: 90  KEEAKEEEESDEDMGFGLFD 109


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 262 SDDDMGFGLFD 294
           SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 262 SDDDMGFGLFD 294
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 262 SDDDMGFGLFD 294
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 262 SDDDMGFGLFD 294
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 133 GHGH*CLPRLWRTDL 89
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 78  RYSYSRRLTRWWKFAHQXRQQQQP 7
           R S SR     WKF H+  +Q +P
Sbjct: 153 RLSISRVKPEEWKFIHELSKQPEP 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,113,551
Number of Sequences: 5004
Number of extensions: 13694
Number of successful extensions: 43
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)