Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_E22
         (451 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    48   5e-06
05_03_0370 + 13144612-13144639,13144749-13145260,13146995-131473...    28   3.0  
02_04_0357 - 22339691-22339773,22340087-22340371,22340407-22340524     28   3.0  
06_03_1078 + 27418886-27419215                                         27   7.0  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 31/92 (33%), Positives = 37/92 (40%)
 Frame = +1

Query: 19  LPXLVRKFPPSCQAAAVAVAPYWPGLFAKALEGINVRXLITNIGSGVXXXXXXXXXXXXX 198
           +P    K     +AA + V  YWPGLFAK LE  +V  LI ++GSG              
Sbjct: 20  IPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILSVGSG-GGAAPVAAAAAPA 78

Query: 199 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 294
                                SDDDMGF LFD
Sbjct: 79  AGGGAAAAPAAEEKKEEAKEESDDDMGFSLFD 110


>05_03_0370 +
           13144612-13144639,13144749-13145260,13146995-13147327,
           13147690-13147699,13149704-13149816,13151187-13151258,
           13151397-13151432,13151552-13151597,13151726-13151828,
           13151916-13151973,13152231-13152281
          Length = 453

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 55  QAAAVAVAPYWPGLFAKALEG 117
           +AAA AVAP WP   A A EG
Sbjct: 159 RAAATAVAPIWPSTDAIAAEG 179


>02_04_0357 - 22339691-22339773,22340087-22340371,22340407-22340524
          Length = 161

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 9   AAAVAVTGAQISTILSSGGCSC--SAILARSVRQSLGRHQCPXPDHQHRLW 155
           +++   +G+  + +    GCSC  S I    +R   G  + P PD    LW
Sbjct: 62  SSSCGTSGSLYALVFLVTGCSCIYSCIYRSKLRSQYGLQETPCPDCLVHLW 112


>06_03_1078 + 27418886-27419215
          Length = 109

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 54  SSGGCSCSAILARSVRQSLGRHQCPXPDHQHRLWSG 161
           ++G  + S+  +RS R   G  + P P H  R+W+G
Sbjct: 18  TAGTSAASSWSSRSNRAPSGAFRPPDPRHPGRIWTG 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,193,517
Number of Sequences: 37544
Number of extensions: 121849
Number of successful extensions: 368
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)