Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_E20
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    28   1.3  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    28   1.3  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    26   5.2  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    26   6.8  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   6.8  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    25   9.0  

>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = +3

Query: 378 KISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAE 509
           ++  D  +K++    +   LK++ E+K +  +++CN+    F E
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVE 149


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 439 LSKYSSPFVGTSFNCTSGLILKHGDTISKLSSSSFIVF 326
           LS  ++  VGT     +G+I+K G+ + +L+    +VF
Sbjct: 491 LSTPTAVMVGTGVGALNGIIIKGGEILERLNQVDTVVF 528


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 474 TKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQVADF 605
           TK  K  S    + + Y+H  P +S+PEKL  T + Q +Q  +F
Sbjct: 409 TKRMKRVSCLEPHGAMYLH--PSVSLPEKLITTAKAQKIQPDEF 450


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 435  LKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQN 587
            L +I+  K IA V+      SK   N+S Y+H+F     P+ ++P   W N
Sbjct: 921  LTIIEAAKRIATVSL----ESKLQFNESDYLHQFK----PDIMEPVSLWIN 963


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 438 KVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQVAD 602
           +VI+E+ +++   + +   S      S+Y  E  + S  E + PT+E     V+D
Sbjct: 346 QVIQEKSHLSKSKRVDSFLSVSPPAFSEYTSELQKKSKQELIDPTLEGPRWTVSD 400


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 427 SSPFVGTSFNCTSGLILKHGDTISKLSSSSF 335
           SSPF+  +F+CT    +   + + K +SSSF
Sbjct: 37  SSPFM--AFSCTQKPSVSENENVGKYASSSF 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,163
Number of Sequences: 5004
Number of extensions: 52392
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)