Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_E20
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0136 + 10591247-10591352,10591463-10591712,10595401-105955...    44   1e-04
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251...    33   0.25 
11_03_0150 + 10810322-10810380,10810530-10810593,10810803-108110...    30   1.8  
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873...    29   3.1  
06_03_0899 - 25776159-25776797,25776898-25777806,25779425-257795...    28   7.1  
08_01_0048 + 335868-336682,338382-340386                               28   9.4  

>11_03_0136 +
           10591247-10591352,10591463-10591712,10595401-10595578,
           10596741-10597136
          Length = 309

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
 Frame = +3

Query: 339 DDEDNLD-IVSPCFKIS--PDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAE 509
           D +D+ D I+ P F +   PD +  E P +G EYL +V  E   I  V     D +    
Sbjct: 82  DSDDDYDGILKPAFAVDGDPDFESGE-PLDGFEYLRRVRWEANQIPRVKVAKIDLNTARN 140

Query: 510 NQSQYVHEFPRLS-VPEKLKPTIEWQNMQVADFSETRMYISRL 635
            Q+ Y+ E P ++     L  +  W++  +  FSETR+  S L
Sbjct: 141 EQTPYMPEIPDIAKCSPDLCASKPWEDTFITYFSETRLAFSEL 183


>08_02_1063 +
           24024030-24024506,24024803-24024856,24024965-24025118,
           24025314-24025388,24025511-24025788,24026023-24026253,
           24026522-24026620,24026740-24026889,24027830-24027976,
           24028525-24028575,24028647-24028819,24029018-24029147,
           24029361-24029458,24029655-24029892,24030634-24030837,
           24031003-24031083,24031296-24031535
          Length = 959

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 439 LSKYSSPFVGTSFNCTSGLILKHGDTISKLSSSSFIVF 326
           L+  ++  VGTS   T GL+L+ GD + K S    IVF
Sbjct: 565 LATPTAVLVGTSLGATRGLLLRGGDILEKFSEVDAIVF 602


>11_03_0150 +
           10810322-10810380,10810530-10810593,10810803-10811047,
           10811627-10811747,10811821-10811895,10811986-10812112,
           10812194-10812939,10813065-10813195,10813547-10813636,
           10814000-10814105
          Length = 587

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 369 PCFKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYS 497
           P  K  P     +  TNG  +  K++ E K  A   K N+DYS
Sbjct: 161 PSAKEIPSSSKVQSKTNGHHHKQKIVNEAKRKAEALKDNRDYS 203


>01_06_1513 -
           37884198-37884485,37884966-37886951,37886976-37887305,
           37887397-37887471,37887543-37887734,37887922-37888173,
           37888248-37888803,37888881-37889088,37889624-37889736,
           37890029-37890060,37890545-37890619
          Length = 1368

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 384 SPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAEN 512
           SPD+ L+ +P+   E L ++ +E   +  + +C++  S  A N
Sbjct: 543 SPDLSLENLPSKQNEVLTEISEEPATLDGMLECSRSGSSQASN 585


>06_03_0899 -
           25776159-25776797,25776898-25777806,25779425-25779592,
           25779703-25779890,25779993-25780137,25780566-25780775
          Length = 752

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 357 DIVSPCFKISPDVQLKEVPTNGEEYLLKVIKE 452
           ++VSP  K+  D+    +P+NG E+   V+KE
Sbjct: 113 EVVSP--KVESDLSAMNIPSNGSEWAELVVKE 142


>08_01_0048 + 335868-336682,338382-340386
          Length = 939

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 442 TLSKYSSPFVGTSFNCTSGLILKHGDTISKLSSS 341
           TL+KY    +G  F+CT+ + + H   I+++ SS
Sbjct: 207 TLAKYVYDKIGHQFDCTAFVSVSHKPDITRILSS 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,163,148
Number of Sequences: 37544
Number of extensions: 274080
Number of successful extensions: 539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)