Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_E20
         (768 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC104968-1|AAI04969.1|  280|Homo sapiens survival of motor neuro...    41   0.004
AJ250932-1|CAC16117.2|  269|Homo sapiens survival interacting pr...    41   0.004
AF027150-1|AAB82297.1|  280|Homo sapiens survival of motor neuro...    41   0.004
AB037702-1|BAB03509.1|  250|Homo sapiens SMN interacting protein...    41   0.004
AB037701-1|BAB03508.1|  265|Homo sapiens SMN interacting protein...    41   0.004

>BC104968-1|AAI04969.1|  280|Homo sapiens survival of motor neuron
           protein interacting protein 1 protein.
          Length = 280

 Score = 41.1 bits (92), Expect = 0.004
 Identities = 26/90 (28%), Positives = 36/90 (40%)
 Frame = +3

Query: 363 VSPCFKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPR 542
           V PC  ++        P   +EYL +V  E      V     D  K    QS  +     
Sbjct: 31  VEPC-DLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGC 89

Query: 543 LSVPEKLKPTIEWQNMQVADFSETRMYISR 632
              PE   PT++WQ  QVA FS  R  +++
Sbjct: 90  QPAPEGYSPTLQWQQQQVAQFSTVRQNVNK 119


>AJ250932-1|CAC16117.2|  269|Homo sapiens survival interacting
           protein 1 protein.
          Length = 269

 Score = 41.1 bits (92), Expect = 0.004
 Identities = 26/90 (28%), Positives = 36/90 (40%)
 Frame = +3

Query: 363 VSPCFKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPR 542
           V PC  ++        P   +EYL +V  E      V     D  K    QS  +     
Sbjct: 20  VEPC-DLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGC 78

Query: 543 LSVPEKLKPTIEWQNMQVADFSETRMYISR 632
              PE   PT++WQ  QVA FS  R  +++
Sbjct: 79  QPAPEGYSPTLQWQQQQVAQFSTVRQNVNK 108


>AF027150-1|AAB82297.1|  280|Homo sapiens survival of motor neuron
           protein interacting protein 1 protein.
          Length = 280

 Score = 41.1 bits (92), Expect = 0.004
 Identities = 26/90 (28%), Positives = 36/90 (40%)
 Frame = +3

Query: 363 VSPCFKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPR 542
           V PC  ++        P   +EYL +V  E      V     D  K    QS  +     
Sbjct: 31  VEPC-DLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGC 89

Query: 543 LSVPEKLKPTIEWQNMQVADFSETRMYISR 632
              PE   PT++WQ  QVA FS  R  +++
Sbjct: 90  QPAPEGYSPTLQWQQQQVAQFSTVRQNVNK 119


>AB037702-1|BAB03509.1|  250|Homo sapiens SMN interacting protein
           1-gamma protein.
          Length = 250

 Score = 41.1 bits (92), Expect = 0.004
 Identities = 26/90 (28%), Positives = 36/90 (40%)
 Frame = +3

Query: 363 VSPCFKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPR 542
           V PC  ++        P   +EYL +V  E      V     D  K    QS  +     
Sbjct: 31  VEPC-DLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGC 89

Query: 543 LSVPEKLKPTIEWQNMQVADFSETRMYISR 632
              PE   PT++WQ  QVA FS  R  +++
Sbjct: 90  QPAPEGYSPTLQWQQQQVAQFSTVRQNVNK 119


>AB037701-1|BAB03508.1|  265|Homo sapiens SMN interacting
           protein1-beta protein.
          Length = 265

 Score = 41.1 bits (92), Expect = 0.004
 Identities = 26/90 (28%), Positives = 36/90 (40%)
 Frame = +3

Query: 363 VSPCFKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPR 542
           V PC  ++        P   +EYL +V  E      V     D  K    QS  +     
Sbjct: 31  VEPC-DLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGC 89

Query: 543 LSVPEKLKPTIEWQNMQVADFSETRMYISR 632
              PE   PT++WQ  QVA FS  R  +++
Sbjct: 90  QPAPEGYSPTLQWQQQQVAQFSTVRQNVNK 119


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,642,335
Number of Sequences: 237096
Number of extensions: 1592070
Number of successful extensions: 6106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6103
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)