Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_E20
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024765-6|AAF60526.2|  254|Caenorhabditis elegans Smn (survival...    33   0.22 
U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical p...    29   4.8  
AL132876-17|CAC48140.1|  934|Caenorhabditis elegans Hypothetical...    28   8.4  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AC024765-6|AAF60526.2|  254|Caenorhabditis elegans Smn (survival of
           motor neuron)protein interactor protein 1, isoform a
           protein.
          Length = 254

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
 Frame = +3

Query: 390 DVQLKEVPTNGEEYLLKVIKER---KNIAAVTKCNKDY-SKFAENQSQYVH-----EFPR 542
           DV +     +  +YL ++  ER   KN+  + + + D  S  A+ Q Q++      E  +
Sbjct: 17  DVDMTSPAMSAAQYLRQMQAERRGTKNVVRIAQKSPDSTSPEAKKQKQWLESVGYQEVKK 76

Query: 543 LSVPEKLKPTIEWQNMQVADFSETRMYISRLLSK 644
           +  P  L P+ EW+  +   F ETR  ++  + K
Sbjct: 77  IETPSPLIPSEEWRQEKCRKFEETRAKMALKIEK 110


>U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical
           protein K06C4.9 protein.
          Length = 492

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 659 FPYFPF*QQTRYVHSSF*EICYLHVLPFNC 570
           FP+FP   +    H+ F   C +++ PF C
Sbjct: 212 FPFFPGYNKIGSAHTIFSAFCLVYIYPFGC 241


>AL132876-17|CAC48140.1|  934|Caenorhabditis elegans Hypothetical
           protein Y105E8A.21 protein.
          Length = 934

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/70 (24%), Positives = 29/70 (41%)
 Frame = +3

Query: 375 FKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVP 554
           +K  PD   K      + Y L  + + K I     C+K+Y+    N    ++   R  V 
Sbjct: 188 YKNRPDDFRKLSKKAKQAYTLDAVTKNKGIVKCLVCDKEYT----NHMSIIYHIDRCQVD 243

Query: 555 EKLKPTIEWQ 584
           + L+P   W+
Sbjct: 244 KSLQPWKCWR 253


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +3

Query: 426 EYLLKVIKERKNI-AAVTKCNKDY---SKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQ 593
           EYL K I +  +I  A++K   +     +  E  S     F R ++PE  K + EW+N  
Sbjct: 370 EYLQKKISKELSIHKAISKITTEMLTNKRIVETMSMASKFFGRKTLPEFFKDSNEWENQL 429

Query: 594 V 596
           V
Sbjct: 430 V 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,282,682
Number of Sequences: 27780
Number of extensions: 292828
Number of successful extensions: 815
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)