Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_E16
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 31 0.12
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 29 0.49
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 29 0.65
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 27 2.6
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 27 3.5
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 27 3.5
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 27 3.5
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 25 8.0
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 8.0
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 526 CSSCIVRSTPWLPWRLRRKRTPSVWRLRRKRTPSV 630
C C + PW R + TPSVW L + +PSV
Sbjct: 1499 CPDCCSKEGKLYPWNTRPRSTPSVW-LSQAYSPSV 1532
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 29.5 bits (63), Expect = 0.49
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = -2
Query: 435 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 343
SD ++ G+ P +PA +PLS+R+ P Y+P
Sbjct: 30 SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 29.1 bits (62), Expect = 0.65
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = -3
Query: 659 KHQPIYRLLQTEGVRFLRSLQTEGVRFLRSLQGSQGVLRTMQ 534
++ PI LL E ++ L+++ T+ + S QGS+ V+ TMQ
Sbjct: 267 QYMPILPLL-LERLKSLQNMHTDAAEAISSWQGSKDVMMTMQ 307
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +3
Query: 306 IRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSE 467
+ L + F G V G V +A+ + RVK ++LG P + T SE
Sbjct: 564 VELSISKNIFFIGGGKAVHGLVNLASSRNVSDRVKCMVNFLGTEPLVGLKTASE 617
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = -1
Query: 394 SGDNAAIPTNPKT-----TIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLI 239
S + IP+ P T + + KNS A + +L + +D S+SPA +H +I
Sbjct: 449 SSNKRLIPSTPPTKKPINAVLDAAKNSAAKDLHLAKMKLNNKNDESSLSPAKSHAVI 505
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -2
Query: 411 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIG 232
+ PS+P + +P+S +PP R +S+ S L + L +FP P ++ Y
Sbjct: 160 SKPSKPRKKVPVSHPLPP---TPPSREEHVSVPRESSLFTYEDDPLPSFPSPYMVDDYYT 216
Query: 231 SD 226
D
Sbjct: 217 QD 218
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -2
Query: 441 SGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSG-----LVLFFLMT 277
S + D G S P+E+MPL + + P +PG +++ + L FF+ +
Sbjct: 214 SPTSGDQTGNISFGLPSEVMPLFPQIEAVYEMYPHSLPGFNVNITTNSKDTRLARFFVSS 273
Query: 276 LLAF 265
L+ F
Sbjct: 274 LIPF 277
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 534 LHCTQHPLATLEATEETYPLRLEATEETYPLRLEEPVYG 650
+HCT + AT E + R T++T+P L+ V G
Sbjct: 137 VHCTMYIPATKEHPLRIWVPRRSPTKQTWPNYLDNSVAG 175
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 360 KPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIGSD 226
K Y+P I GL++ TLS +LM L+ P ++ + G D
Sbjct: 50 KVLYAPRTTIEGLNLPTLSSSYYKWLMDLVNIPD-DVVQNCAGLD 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,595,195
Number of Sequences: 5004
Number of extensions: 53906
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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