Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_E16
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 35 0.055
06_01_0172 + 1362101-1363708 31 0.68
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 0.90
09_04_0377 + 17086775-17088310 30 1.6
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 2.7
12_02_0259 + 16527788-16527842,16528014-16528381 28 6.3
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 8.4
11_03_0112 - 10135052-10135168,10135712-10135795,10135879-101359... 28 8.4
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 28 8.4
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 35.1 bits (77), Expect = 0.055
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Frame = +2
Query: 131 QYQFFPVSSGSVQFKVRAANDAHVALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKPDK 310
+++F G + F+ A ND V L Q Y + + ++ +R K K
Sbjct: 22 EFRFRETGRGCITFEASAHND--VTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLK 79
Query: 311 VEIESP--------GILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVY 457
+E++ G+ ++ +W+ G+IS GR W DP+P V
Sbjct: 80 IEVDGKTVVDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQ 139
Query: 458 YVGVCTGW 481
YVG+ + W
Sbjct: 140 YVGL-SSW 146
>06_01_0172 + 1362101-1363708
Length = 535
Score = 31.5 bits (68), Expect = 0.68
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +3
Query: 252 LEAGETLRASSGKIEPSPIRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSY-- 425
L + LR ++ +P +L + P L NI++ G VGI LDA +K+
Sbjct: 167 LVSARRLRLAAALFRAAPTKLYI-TPN-LVSCNILLKGLVGIG---DLDAALKVLDEMPG 221
Query: 426 LGLIPNLSQFTTSESAQAGVPQAPGKSK 509
LG+ P++ +TT SA G G K
Sbjct: 222 LGITPDVVTYTTVLSAYCGKGDIEGAQK 249
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 335 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 445
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>09_04_0377 + 17086775-17088310
Length = 511
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 574 RRKRTPSVWRLRRKRTPSVWRSR 642
RR R+PS +R RR R+PS +R R
Sbjct: 43 RRDRSPSPYRSRRDRSPSPYRDR 65
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 323 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 460
SP +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>12_02_0259 + 16527788-16527842,16528014-16528381
Length = 140
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 421 EWNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVS 263
E +S +A+ G +A+P PK +F + + L+G G P++ SV+
Sbjct: 68 EVSSVVVAAPGFRSAVPVEPK--LFRRIAGGEEKGYYLVGDGEAIPNNGSSVT 118
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -2
Query: 432 DQDMNGIASPSRPAEIMPLS-QR----TQKPRYSPPLRIP 328
D+ + SP+ PA P S QR Q PRY PPLR P
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>11_03_0112 -
10135052-10135168,10135712-10135795,10135879-10135953,
10137801-10137978,10138048-10138212,10138291-10138337,
10140233-10140301,10140531-10140629,10141256-10141375,
10141459-10141581,10149251-10149364,10150725-10150913,
10151058-10151110,10151365-10151470,10151957-10152085
Length = 555
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = -1
Query: 550 CCVQCSCYRCSRWHFDFPGACGTPACADSDVVNWERFGIRPRYEWNSFTLASSGDNAA 377
CC + RC W + G G + DV + + YE SF A SG N+A
Sbjct: 40 CCAKPK-KRCVDWIGEGGGLGGMEEYIEEDVGTCSAWNLEANYEVVSFIYAFSGINSA 96
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 328 GAFNFNLIGLGSIFPDDALSVSPASNHHLIHRIRFLRAC 212
G++NF+L L + D A + PAS+ L+ +R R C
Sbjct: 11 GSYNFHLRSLSAASRDSAAAADPASDPILLESVR--RVC 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,693,309
Number of Sequences: 37544
Number of extensions: 389641
Number of successful extensions: 1304
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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