Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_E15
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   8.5  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +2

Query: 341 VNLRTLTTPTKILLRGFAKTTMNASLVLKMKNSIWN 448
           + +  +  P   LL GF ++T + +  ++  N  WN
Sbjct: 13  IGVLLMLAPINALLLGFVQSTPDNNKTVREFNVYWN 48


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +3

Query: 492 PSQRPQRQIRQAHTKEGF---QIRKQIRQAPEEGRRIQLP*PIEGREKEGIHLGRGRQ 656
           P   P++Q +QA   +G     + +Q + AP+      LP P+    +      RGRQ
Sbjct: 219 PGMHPRQQ-QQAQQHQGVVTSPLSQQQQAAPQGAASANLPSPLYPWMRSQFERKRGRQ 275


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 584 AFFWSLANL--FSYLETFFSVGLTNLPLRSLTWEFRSE 477
           +F + +A L  F+ +  F  VG   +PL    WE  +E
Sbjct: 314 SFGYCIATLLEFAGVHYFTKVGSGEIPLEEEEWENENE 351


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -1

Query: 71  ELEDGPTRWFSQHEPQLLI 15
           E +DGP +W S  + ++++
Sbjct: 73  EEDDGPYKWISPGDTKVMV 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,255
Number of Sequences: 438
Number of extensions: 2388
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)