Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_E14
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 33 0.30
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 32 0.52
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 31 1.2
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.6
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 30 2.1
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405... 30 2.8
04_03_0904 + 20717005-20718087 29 3.6
03_02_0697 - 10487661-10488342,10490474-10490556 29 3.6
02_05_0076 + 25637752-25639062,25639221-25639297,25640962-256410... 29 3.6
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 29 4.8
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 4.8
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 8.4
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 33.1 bits (72), Expect = 0.30
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 167 YASQPQQKIYTPQPIQRPYTPQP 235
Y QPQ++ Y PQP +PY P+P
Sbjct: 250 YQPQPQRETYPPQPQVQPYPPKP 272
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 167 YASQPQQKIYTPQPIQRPYTPQP 235
Y QPQ + Y PQP + Y PQP
Sbjct: 241 YPPQPQGETYQPQPQRETYPPQP 263
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 167 YASQPQQKIYTPQPIQRPYTPQP 235
Y QPQ + Y P+P +PY PQP
Sbjct: 259 YPPQPQVQPYPPKPQGQPYPPQP 281
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 167 YASQPQQKIYTPQPIQRPYTPQP 235
Y +PQ + Y PQP +PY PQP
Sbjct: 268 YPPKPQGQPYPPQPQGQPYPPQP 290
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 167 YASQPQQKIYTPQPIQRPYTPQP 235
Y QPQ + Y PQP Y PQP
Sbjct: 232 YPPQPQGQTYPPQPQGETYQPQP 254
>03_06_0353 -
33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 32.3 bits (70), Expect = 0.52
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 171 PLNLNKKYILHNPYSAHILHNQLHQFYNRNTNLL 272
PLNL ++LHNP + H+Q Q Y+ + LL
Sbjct: 57 PLNLVLNHVLHNPAALAAYHHQQQQQYHHHQQLL 90
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 111 HTPHNQPKKRSLHKLHNKHTPLNLNKKYILHNPYSAHILHNQLH 242
H PH+ P H H+ H P + + + H P+ H H+ H
Sbjct: 37 HPPHHHPHPPHHHPPHHPHPPHHPHPPHHPHPPHHPHPPHHHPH 80
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 73 YLSTSTNISHKSNIHPTTNPK-NDHSTSYTTNIRLSTSTKNIYSTTHTAPIYSTTNYTNF 249
Y TS S S + ++P N S YT + S S+ N YS+ T+P YS T+ ++
Sbjct: 1787 YSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSS--TSPTYSPTS-PSY 1843
Query: 250 TIAIPTY 270
+ P+Y
Sbjct: 1844 SQPSPSY 1850
Score = 29.9 bits (64), Expect = 2.8
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Frame = +2
Query: 179 PQQKIYTP-QPIQRPYTP--QPTTPILXXXXXXXXXXXXXXRSSNTYTSYTPKPTWASSI 349
P +Y+P P+ P + PT+P S T SY+ PT S
Sbjct: 1671 PTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYS 1730
Query: 350 DTTPSFNLQQPSQYNYVNTETTDNYQKT 433
T+PS+N P+ +Y + T+ +Y T
Sbjct: 1731 PTSPSYN-YSPTSPSY--SPTSPSYSPT 1755
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 73 YLSTSTNISHKSNIHPTTNPK-NDHSTSYTTNIRLSTSTKNIYSTTHTAPIYSTTNYT-N 246
Y TS + S S ++ T+P N S++Y+ T YS + T+P YS T+ + +
Sbjct: 1662 YSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYS 1721
Query: 247 FTIAIPTY 270
++ P+Y
Sbjct: 1722 YSPTSPSY 1729
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 73 YLSTSTNISHKS-NIHPTTNPKNDHSTSYTTNIRLSTSTKNIYSTTHTAPIYSTTNYTNF 249
Y TS + S S N PT+ N S Y+ + S S+ + + T+P YS T+ T +
Sbjct: 1725 YSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHAYSPSSPRLSPYSQTSPNYSPTSPT-Y 1783
Query: 250 TIAIPTY 270
+ P+Y
Sbjct: 1784 SPTSPSY 1790
>07_01_0547 +
4052618-4052659,4055575-4055741,4055839-4056556,
4056678-4057114,4057241-4057315,4057490-4057673,
4057759-4057854,4057952-4058018,4058556-4058715,
4058808-4059199,4059254-4059300
Length = 794
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 261 YCDCKIGVVGCGVYGRCMGC 202
YC+C G VGC RC GC
Sbjct: 568 YCECYQGGVGCSSNCRCEGC 587
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +2
Query: 197 TPQPIQRPYTPQPTTPILXXXXXXXXXXXXXXRSSNTYTSYTPKPTWASSIDT-TPSFNL 373
TP+P PYTP+PT P + + PKPT A T TP
Sbjct: 88 TPKPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYK 147
Query: 374 QQP 382
QP
Sbjct: 148 PQP 150
>03_02_0697 - 10487661-10488342,10490474-10490556
Length = 254
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 538 YFNTDCTCTKLETASPEVQIR*ASSYGVHTTSS*P 642
YFNTD T T+L ++ + +SS H +SS P
Sbjct: 190 YFNTDLTVTRLSASAAKTTAAISSSNSNHASSSAP 224
>02_05_0076 +
25637752-25639062,25639221-25639297,25640962-25641095,
25641178-25641242,25641431-25641482,25641912-25641994,
25642128-25642221,25642332-25642861
Length = 781
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 100 HKSNIHPTTNPKNDHSTSYTTNIRLSTSTKNI--YSTTHTAPIYSTTNYTNFTIAIPTYL 273
H+SNI TNP ++ TS T + L T TK S +H +++ + + I T
Sbjct: 705 HQSNIIRNTNPNHNGDTSATWSEELMTPTKQSPRSSASHPMEGDQAPSHSAWGLVIVTAG 764
Query: 274 HRDYTR 291
H + R
Sbjct: 765 HEGHIR 770
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 210 YSAHILHNQLHQFYNRNTNLLTQRLHKREVQTLT-QVTLQNRHGLAA 347
+ +ILH +L+ + + +T ++ + +H EVQ T ++ LQ +G AA
Sbjct: 570 FKDYILHPKLNGYRSLHTVIMCEGIHPFEVQIRTKEMHLQAEYGFAA 616
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 193 IYSTTHTAPIYSTTNYTNFTIAIP-TYLHRDYTREKFKHLHK-LHSKTDMG 339
++ T +A +Y T + T +H Y+ EKF HLH+ L + ++G
Sbjct: 214 VFRTMRSAALYVETGKVTIRAFVQKTSVHEVYSFEKFTHLHESLQKRLNLG 264
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 193 IYSTTHTAPIYSTTNYTNFTIAIP-TYLHRDYTREKFKHLHK-LHSKTDMG 339
++ T +A Y T + T +H Y+ EKF HLH+ L + ++G
Sbjct: 181 VFRTKRSAAFYVETGKVTIRAFVQKTSVHEVYSFEKFTHLHESLQKRLNLG 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,046,662
Number of Sequences: 37544
Number of extensions: 389254
Number of successful extensions: 1276
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -