Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_E14
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   2.1  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   3.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 63  SCNLLIDLNQHIPQIKHTPHNQPKKRSLHKLHNKHTPLNLNKKYILHNPYSAHILHNQLH 242
           +CN   +L + I +   TP +      L      HTP  + K +I H+ Y  + L   L 
Sbjct: 761 ACNRS-ELVEAILKRVQTPFDPDVPIELQIQKQSHTPNGIVKTWIAHDRYLPNSLRILLK 819

Query: 243 QFYNRNT 263
           +F +  T
Sbjct: 820 RFLDITT 826


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 150 KLHNKHTPLNLNKKYILHNPYSAHILHNQLHQFYNRN 260
           K+ + + PL+ N  Y  +N Y+ +  HN    +YN N
Sbjct: 80  KIISNNNPLSNNYNY--NNNYNNYNKHNYNKLYYNIN 114


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +1

Query: 172 LSTSTKNIYSTTHTAPIYSTTNYTNFTIAIPTYLHRDYTREKFKHLHKL 318
           LS  + N  S T+ A I+   ++ +  + +P  +  DY       LH +
Sbjct: 39  LSIDSINEESMTYVADIFLAQSWRDSRLRLPENMSEDYRILDVDWLHNI 87



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 130 PKNDHSTSYTTNIRLSTSTKNIYSTTHTAPIYSTTNYTNFTIAIPTYL 273
           P+ D S +YTT+  +  ST N         +     Y  F   IP+ L
Sbjct: 179 PQLDISNNYTTDCTIEYSTGNFTCIQIVFNLRRRLGYHLFHTYIPSAL 226


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 461 PPPWEQDS 484
           PPPWE DS
Sbjct: 125 PPPWETDS 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,189
Number of Sequences: 438
Number of extensions: 5459
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)