Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_E08
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    74   1e-14
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    74   1e-14
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    26   3.4  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    25   5.9  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   7.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   7.9  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 35/49 (71%), Positives = 42/49 (85%)
 Frame = +1

Query: 79  PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 225
           P  LA+V+KVLGRTGS+G  TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 35/49 (71%), Positives = 42/49 (85%)
 Frame = +1

Query: 79  PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 225
           P  LA+V+KVLGRTGS+G  TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 201 SFHVPDDLTAGLPNELDLHLSTLALRTSTAEYFHDTSKNVGFI 73
           S H+P   ++ + N L  + +++++R  T  Y+H   K +  I
Sbjct: 57  SIHMPAPFSSVVRNALKANPNSVSIRDITTHYYHFAEKMLHLI 99


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +1

Query: 43  VLSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSR 177
           +   I  A +D+P  + ++V+ +  T  +  CT+VK+    + ++
Sbjct: 114 IQEGIGSALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNK 158


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 178 DGWSPQ*TRPSLEYTGPENQYGRVLSRHEQ 89
           D  S +   P L  T PE + GRVLS  EQ
Sbjct: 503 DADSSEPASPVLMPTKPEKKKGRVLSETEQ 532


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 21  LWCTCVNCXKLDITSQN 71
           L C C NC KL I S N
Sbjct: 105 LECVCWNCGKLKIDSSN 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,380
Number of Sequences: 5004
Number of extensions: 28715
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)