Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_E07
(623 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022326-1|AAH22326.2| 59|Homo sapiens small EDRK-rich factor ... 46 1e-04
BC015491-1|AAH15491.2| 59|Homo sapiens small EDRK-rich factor ... 46 1e-04
AF073298-1|AAC63516.1| 59|Homo sapiens small EDRK-rich factor ... 46 1e-04
BC021174-1|AAH21174.1| 62|Homo sapiens small EDRK-rich factor ... 42 0.002
AF073518-1|AAC63517.1| 62|Homo sapiens small EDRK-rich factor ... 42 0.002
BC104738-1|AAI04739.1| 110|Homo sapiens small EDRK-rich factor ... 37 0.050
BC103687-1|AAI03688.1| 110|Homo sapiens small EDRK-rich factor ... 37 0.050
BC101970-1|AAI01971.1| 110|Homo sapiens SERF1B protein protein. 37 0.050
BC093882-1|AAH93882.1| 110|Homo sapiens small EDRK-rich factor ... 37 0.050
BC093880-1|AAH93880.1| 110|Homo sapiens small EDRK-rich factor ... 37 0.050
BC035932-1|AAH35932.1| 110|Homo sapiens small EDRK-rich factor ... 37 0.050
AF073519-1|AAC63518.1| 110|Homo sapiens small EDRK-rich factor ... 37 0.050
U27330-1|AAC50189.1| 374|Homo sapiens alpha (1,3) fucosyltransf... 31 2.5
U27329-1|AAC50188.1| 374|Homo sapiens alpha (1,3) fucosyltransf... 31 2.5
M81485-1|AAA98117.1| 374|Homo sapiens alpha(1,3)-fucosyltransfe... 31 2.5
>BC022326-1|AAH22326.2| 59|Homo sapiens small EDRK-rich factor 2
protein.
Length = 59
Score = 45.6 bits (103), Expect = 1e-04
Identities = 24/43 (55%), Positives = 28/43 (65%)
Frame = +2
Query: 245 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRDA 373
MTRGNQR+LAR KN KKQ + K K + GLS RK RD+
Sbjct: 1 MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAARKQRDS 41
>BC015491-1|AAH15491.2| 59|Homo sapiens small EDRK-rich factor 2
protein.
Length = 59
Score = 45.6 bits (103), Expect = 1e-04
Identities = 24/43 (55%), Positives = 28/43 (65%)
Frame = +2
Query: 245 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRDA 373
MTRGNQR+LAR KN KKQ + K K + GLS RK RD+
Sbjct: 1 MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAARKQRDS 41
>AF073298-1|AAC63516.1| 59|Homo sapiens small EDRK-rich factor 2
protein.
Length = 59
Score = 45.6 bits (103), Expect = 1e-04
Identities = 24/43 (55%), Positives = 28/43 (65%)
Frame = +2
Query: 245 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRDA 373
MTRGNQR+LAR KN KKQ + K K + GLS RK RD+
Sbjct: 1 MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAARKQRDS 41
>BC021174-1|AAH21174.1| 62|Homo sapiens small EDRK-rich factor 1A
(telomeric) protein.
Length = 62
Score = 41.9 bits (94), Expect = 0.002
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = +2
Query: 245 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRDA 373
M RGNQR+LAR KN KK E+ K K ++ L+ +RK RD+
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRKQRDS 41
>AF073518-1|AAC63517.1| 62|Homo sapiens small EDRK-rich factor 1,
short isoform protein.
Length = 62
Score = 41.9 bits (94), Expect = 0.002
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = +2
Query: 245 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRDA 373
M RGNQR+LAR KN KK E+ K K ++ L+ +RK RD+
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRKQRDS 41
>BC104738-1|AAI04739.1| 110|Homo sapiens small EDRK-rich factor 1B
(centromeric) protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.050
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 245 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 361
M RGNQR+LAR KN KK E+ K K ++ L+ +RK
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37
>BC103687-1|AAI03688.1| 110|Homo sapiens small EDRK-rich factor 1B
(centromeric) protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.050
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 245 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 361
M RGNQR+LAR KN KK E+ K K ++ L+ +RK
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37
>BC101970-1|AAI01971.1| 110|Homo sapiens SERF1B protein protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.050
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 245 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 361
M RGNQR+LAR KN KK E+ K K ++ L+ +RK
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37
>BC093882-1|AAH93882.1| 110|Homo sapiens small EDRK-rich factor 1A,
telomeric protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.050
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 245 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 361
M RGNQR+LAR KN KK E+ K K ++ L+ +RK
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37
>BC093880-1|AAH93880.1| 110|Homo sapiens small EDRK-rich factor 1A
(telomeric) protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.050
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 245 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 361
M RGNQR+LAR KN KK E+ K K ++ L+ +RK
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37
>BC035932-1|AAH35932.1| 110|Homo sapiens small EDRK-rich factor 1A
(telomeric) protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.050
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 245 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 361
M RGNQR+LAR KN KK E+ K K ++ L+ +RK
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37
>AF073519-1|AAC63518.1| 110|Homo sapiens small EDRK-rich factor 1,
long isoform protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.050
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 245 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 361
M RGNQR+LAR KN KK E+ K K ++ L+ +RK
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37
>U27330-1|AAC50189.1| 374|Homo sapiens alpha (1,3)
fucosyltransferase protein.
Length = 374
Score = 31.5 bits (68), Expect = 2.5
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 4 PADGFWLWPAG*RRCVAFVLYTLIIAKSFFS 96
PA WLW RRC+A +L+ L++A FFS
Sbjct: 6 PAKPQWLW----RRCLAGLLFQLLVAVCFFS 32
>U27329-1|AAC50188.1| 374|Homo sapiens alpha (1,3)
fucosyltransferase protein.
Length = 374
Score = 31.5 bits (68), Expect = 2.5
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 4 PADGFWLWPAG*RRCVAFVLYTLIIAKSFFS 96
PA WLW RRC+A +L+ L++A FFS
Sbjct: 6 PAKPQWLW----RRCLAGLLFQLLVAVCFFS 32
>M81485-1|AAA98117.1| 374|Homo sapiens
alpha(1,3)-fucosyltransferase protein.
Length = 374
Score = 31.5 bits (68), Expect = 2.5
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 4 PADGFWLWPAG*RRCVAFVLYTLIIAKSFFS 96
PA WLW RRC+A +L+ L++A FFS
Sbjct: 6 PAKPQWLW----RRCLAGLLFQLLVAVCFFS 32
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,445,915
Number of Sequences: 237096
Number of extensions: 1203570
Number of successful extensions: 2559
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2554
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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