Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_E06
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0708 + 22338847-22339137,22339245-22339373 32 0.41
02_04_0534 + 23725051-23726253 30 1.6
01_05_0221 - 19450497-19450586,19450758-19450856,19451059-194512... 30 1.6
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 30 2.2
01_06_0161 + 27108920-27109279,27109479-27109598,27110301-271104... 30 2.2
05_01_0469 - 3725117-3725170,3725282-3725356,3726938-3727015,372... 29 2.9
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494... 29 3.8
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 29 5.0
09_02_0293 - 7015641-7015647,7015731-7015841,7015932-7016105,701... 28 6.6
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002... 28 8.8
>12_02_0708 + 22338847-22339137,22339245-22339373
Length = 139
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 208 ATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQ 330
A AP T P G+YM M+L A+ +L +++ QVQ
Sbjct: 2 AIAGAPPTTSHQPKSGQYMDMDLLAALFSLTATIFEVSQVQ 42
>02_04_0534 + 23725051-23726253
Length = 400
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Frame = +1
Query: 175 APPSYVAPQLCATPSAPSATHVY----PTLGEYMGMELSQAVIALNMPEYQIQQVQPTSS 342
APP P +P H Y P G+ + ++ L +PE V P +
Sbjct: 61 APPPAAPLAPAPPPDSPRTPHTYGSFLPIYGDLPPLSVTVVQETLPLPEGGDHPVPPKKT 120
Query: 343 NVVAPLSSQSLSLPKATVTQAIRQVVLC 426
VAPL + P T A + LC
Sbjct: 121 IDVAPLLPEHADQPVVTNNSATTRPQLC 148
>01_05_0221 -
19450497-19450586,19450758-19450856,19451059-19451209,
19451305-19451374,19451417-19451545,19451848-19451905,
19452037-19452215,19452545-19452944
Length = 391
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 295 LNMPEYQIQQVQPTSSNVVAPLSSQSLSLP 384
LN+ Y+ +PT S+VVA LSS+ +SLP
Sbjct: 324 LNLLGYENAADRPTMSDVVAMLSSEGVSLP 353
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 29.9 bits (64), Expect = 2.2
Identities = 26/77 (33%), Positives = 32/77 (41%)
Frame = +1
Query: 166 QHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSSN 345
QHQAPP P L A P AP+A P SQ ++P Q+Q V P
Sbjct: 257 QHQAPPPSHPPALPALP-APNA----PPPPAPQSQPPSQ--FPGHLPHSQVQSVPPAPPT 309
Query: 346 VVAPLSSQSLSLPKATV 396
+AP Q P + V
Sbjct: 310 PLAPTIPQESYYPPSAV 326
>01_06_0161 +
27108920-27109279,27109479-27109598,27110301-27110438,
27110680-27110784,27110883-27111051,27111507-27111583,
27111796-27111840,27111984-27112022,27112374-27112457,
27112846-27112884,27112963-27113025,27113109-27113238,
27113319-27113374
Length = 474
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +1
Query: 448 GLRLHSVDSG-----VFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDILKK 612
GL L + G + V + + P AG+R GD++L +N + V G + +L+
Sbjct: 173 GLNLREIPDGNGSSKLMVLGLILDGPAHSAGVRQGDELLSVNGIDVMGKSAFDVSSMLQG 232
Query: 613 APANNITMAVR 645
+T+ V+
Sbjct: 233 PKDTFVTIKVK 243
>05_01_0469 -
3725117-3725170,3725282-3725356,3726938-3727015,
3727091-3727183,3727582-3727696,3728028-3728158,
3728243-3728512,3728983-3729120
Length = 317
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 454 RLHSVDSGVFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDIL 606
R++ + SG+ V V+ SP G+R GD I +++ T + D+L
Sbjct: 206 RVYGISSGLIVAKVSNGSPAERNGIRMGDVIFHCQQESIS--TTAQFEDVL 254
>11_01_0618 -
4941906-4942118,4942231-4942343,4942534-4942651,
4942762-4942881,4942964-4943101,4943392-4943517,
4943659-4943847,4943951-4944238,4944344-4944374,
4945014-4945216
Length = 512
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +1
Query: 415 VVLCKDRNGKCGLRLHSVDSGVFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKC 594
+++ +D K L+ H V+ V ++ G L+ R + I E+N+ V + D
Sbjct: 336 LIIIQDGESKKFLKAH-VEPDQIVSWLKEYFDGKLSPFRKSEPIPEVNDEPVKVVVADNV 394
Query: 595 HDILKKAPAN 624
HD + K+ N
Sbjct: 395 HDFVFKSGKN 404
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/59 (23%), Positives = 23/59 (38%)
Frame = +1
Query: 70 WKQSVEFSVSIMSFYPSLEDMKVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYP 246
++Q +++ YP Q Q+ P + +APQ A A SA + P
Sbjct: 246 YQQQLQYQQYYQQHYPGYNPYMQQYQQYGQYQQYTQPQTQIAPQNVAQAPAQSAPYAQP 304
>09_02_0293 -
7015641-7015647,7015731-7015841,7015932-7016105,
7016210-7016855,7017106-7017235
Length = 355
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 327 NLLYLVFGHVKRNYSLGQLHAHIFSQCWVNMSSTRGTRRG 208
++L++ F + + Y L L I S CW+ M R RRG
Sbjct: 231 DILWINFKGIYKLYQLDALDVSIMS-CWILMEIQRARRRG 269
>04_04_1466 -
33799104-33799229,33799659-33799669,33800052-33800200,
33800261-33800299,33800690-33800746,33800839-33801628,
33801705-33801980,33802051-33802117,33802211-33802285,
33802618-33802812,33802927-33803076,33803152-33803522,
33804070-33804193,33804246-33804275,33804306-33804417,
33804919-33804985,33805138-33805180,33805768-33805872
Length = 928
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 112 YPSLEDMKVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGE-YMGMELSQAV 288
YPS + + M++ SQ Q PP+ A + P APS+ H+ P+L + + G + +
Sbjct: 156 YPSTPGVG-NAMIQYPSSQTQLPPTASAMR-DGFPQAPSSMHIAPSLEQPHFGHDGQSSK 213
Query: 289 IALNMPEYQIQ 321
IA++ + ++
Sbjct: 214 IAVDPSDQPLE 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,276,468
Number of Sequences: 37544
Number of extensions: 426079
Number of successful extensions: 1115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -