Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_E03
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    26   0.29 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    26   0.29 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    26   0.29 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   3.6  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   6.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   6.3  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 600 YEHPDEMPEIKPSVLRLSEFKSGLQDMRSHNEQXNDSHRQL 722
           +E P+EM E   SV RL + +   + +R H    +D++ +L
Sbjct: 310 HETPEEMMEFLKSVFRLDQDQCSHRIVREHLGLKHDNYYEL 350


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 600 YEHPDEMPEIKPSVLRLSEFKSGLQDMRSHNEQXNDSHRQL 722
           +E P+EM E   SV RL + +   + +R H    +D++ +L
Sbjct: 543 HETPEEMMEFLKSVFRLDQDQCSHRIVREHLGLKHDNYYEL 583


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 600 YEHPDEMPEIKPSVLRLSEFKSGLQDMRSHNEQXNDSHRQL 722
           +E P+EM E   SV RL + +   + +R H    +D++ +L
Sbjct: 543 HETPEEMMEFLKSVFRLDQDQCSHRIVREHLGLKHDNYYEL 583


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 600 YEHPDEMPEIKPSVLRLSEFKS 665
           +E+ +EM E   S+LRL E +S
Sbjct: 571 HENKEEMMEFLKSILRLDEDQS 592


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 600 YEHPDEMPEIKPSVLRLSEFKS 665
           +E+ +EM E   S+LRL E +S
Sbjct: 571 HENKEEMMEFLKSILRLDEDQS 592


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 600 YEHPDEMPEIKPSVLRLSEFKS 665
           +E+ +EM E   S+LRL E +S
Sbjct: 571 HENKEEMMEFLKSILRLDEDQS 592


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 600 YEHPDEMPEIKPSVLRLSEFKS 665
           +E+ +EM E   S+LRL E +S
Sbjct: 571 HENKEEMMEFLKSILRLDEDQS 592


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -3

Query: 377 LYIKFGTIFTKICLIRFCVCFTSWNCFEIFRFHW 276
           L ++F      +CL  + +  T    F I+  HW
Sbjct: 253 LVVQFFCSLVALCLTMYKLSLTEDLYFAIYEMHW 286


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 263 RKPSQSPTYIITVCSYYNVTKIYIT**GNTNVTTRPK 153
           R P  S      + SYYN +++ ++  GN    T PK
Sbjct: 114 RGPRNSTLRRQQMSSYYNESRVMMSPPGNVLNLTMPK 150


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 263 RKPSQSPTYIITVCSYYNVTKIYIT**GNTNVTTRPK 153
           R P  S      + SYYN +++ ++  GN    T PK
Sbjct: 114 RGPRNSTLRRQQMSSYYNESRVMMSPPGNVLNLTMPK 150


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,734
Number of Sequences: 336
Number of extensions: 4363
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)