Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_E03
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 29 0.74
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 4.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 4.0
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 5.2
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 5.2
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 26 5.2
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 26 5.2
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 26 6.9
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 26 6.9
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 25 9.2
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 9.2
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 25 9.2
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 25 9.2
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.2
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 29.1 bits (62), Expect = 0.74
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Frame = -3
Query: 515 SMYMGIIVYWYFGHQXGNCGSQGHHRPACN-RWSFLPSSCLIY------FYLNLYIKFGT 357
S+ + I + WY G+ S+ RP W S + Y F+ K+G
Sbjct: 7 SILLSIALAWYVGYIINQLTSRNSKRPPIVFHWIPFVGSAVAYGMDPYVFFRECRAKYGD 66
Query: 356 IFTKICLIRFCVCF 315
+FT +C+ R F
Sbjct: 67 VFTFVCMGRKMTAF 80
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 483 IPVDNYS-HIHRSIEHLRSIVPTPLDHHRHLATNLADLRRYEHPDEMPEIKPSVLRL 650
IP +N H+ ++ HL + + +A ++ + ++PDE PE+ P+VL L
Sbjct: 81 IPDENVKKHVRETLLHLLVSLDN-FTLIKAVAYAVSLIANVDYPDEWPEVVPAVLHL 136
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.6 bits (56), Expect = 4.0
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 217 IIMSLKYISHNKVTLTSQHVRKATVQGFKPKITQKIHVLLENKHLKKISAQEK--RRVV 47
II K + N+V + V+K + F P ++ VLL N K SA EK RRVV
Sbjct: 596 IIALCKSLQKNEVLQSLSLVKKLSELPFDPSTSRDASVLLRNLSAKS-SALEKDTRRVV 653
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -2
Query: 408 IILSNLF--LSKF-VYKIWHYLYKNMSYSILRLLYVMELFRDLPFSLGCHYPKTFTITNL 238
+++ +LF L KF VY+ WH L N S S + ++ F + + ++ + N
Sbjct: 736 VLMDSLFSNLQKFPVYEDWHLLIFNASTSSMMKTWLCAKFSLKETNKTSFWHSSYNLFNR 795
Query: 237 YYH 229
YH
Sbjct: 796 QYH 798
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = -2
Query: 309 MELFRDLPFSLGCHYPKTFTITNLYY-----HSLFLL 214
+ + R+LPF++ +Y K + L+Y H LFLL
Sbjct: 57 VRILRELPFTVNSNYKKNNALLLLHYLTRKNHGLFLL 93
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +3
Query: 606 HPDEMPEIKPSVLRLSEFKSGLQDMRSHNEQXNDSHRQLTSQDDGPKGYSAPSTPLS 776
H +PS+ +L F S + S ND + +SQ D + PS+P++
Sbjct: 33 HTQNESSHQPSLNKLGGFSSASLNFNSSRSSTNDDQQTFSSQSD-----NLPSSPIT 84
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 402 LSNLFLSKFVYKIWHYLYKNMSYSILRLLY 313
L+ LF K +Y+I HYL K M +++ L +
Sbjct: 171 LAPLFDEKEIYRIDHYLGKEMVQNLVHLRF 200
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 438 TVVALTTTIPRLMA--EIPVDNYSHIHRSIEHLRSIVPTPLDHHR 566
T+V L +I M+ ++ + +S +HR E + SI T + H R
Sbjct: 336 TIVGLVGSIDNDMSSTDVTIGAFSSLHRICEAVDSISSTAISHSR 380
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 162 CCDVSVTLLCDIYFSDIIIGTNCDNISW*L*RFSDSDSPMKTE 290
C ++S T L + + I T+CD+ S + R SDS S + E
Sbjct: 26 CWNISKTFLSYRTLTALAIETSCDDTSVSVVRTSDSSSHCQNE 68
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 405 ILSNLFLSKFVYKIWH 358
+LS LFL+ F+Y WH
Sbjct: 162 LLSGLFLAYFIYGPWH 177
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +3
Query: 444 VALTTTIPRLMAEIPVDNYSHIHRSI---EHLRSIVPTPLDHHRHLATNLADLRRYEHPD 614
VAL +P L + + S + ++ ++L +VP P + L + D+ R
Sbjct: 251 VALAVLVPILKRALAQRSQSMLRLTVIITDNLCKLVPDPAEASDFLPELIPDVERIAQTA 310
Query: 615 EMPEIK 632
MPE++
Sbjct: 311 AMPEVR 316
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 157 RKATVQGFKPKITQKIHVLLENKHLKKISAQEKRRV 50
RKA ++ ++ K+ ++ L ENK +++S K+ V
Sbjct: 117 RKANLESYRAKLEKEYKTLAENKIQQRLSDGTKQLV 152
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 694 SLCDLISCKPLLNSLNLKTEGLISGISSGCSYR 596
+L DLI+ + LN+ N+ TEG + I +R
Sbjct: 349 TLSDLINMRSYLNASNIPTEGFWNDIDYMSEFR 381
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -1
Query: 145 VQGFKPKITQKIHVLLENKHLKKISAQEKRRVVXLXP 35
++ F P + I +L H ++ ++++RR+ L P
Sbjct: 345 IRDFTPTLRSAIELLTSGTHADRLLSEKRRRMSNLEP 381
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,588
Number of Sequences: 5004
Number of extensions: 71153
Number of successful extensions: 223
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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