Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_E03
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0066 - 18773852-18774466,18774562-18774840 31 1.0
03_01_0558 + 4155220-4155642,4156292-4156348,4157030-4157165,415... 30 1.8
02_04_0123 + 19961904-19962096,19962836-19963029,19963334-199634... 30 2.4
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482... 30 2.4
06_01_0928 - 7159857-7159922,7159923-7160024,7160126-7160206,716... 29 4.1
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627... 29 5.4
01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439... 29 5.4
12_02_1279 + 27510605-27513301 28 7.2
12_01_0860 - 8082481-8082792,8083748-8083816 28 7.2
05_04_0397 - 20937280-20937386,20937494-20939681 28 7.2
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990... 28 7.2
01_01_0324 - 2613396-2613452,2613658-2613750,2614045-2614236,261... 28 7.2
10_08_0331 - 16831646-16834756 28 9.5
07_01_1211 - 11546407-11546466,11546550-11546618,11546777-115468... 28 9.5
02_04_0488 + 23397480-23397687,23397777-23397805,23398462-233985... 28 9.5
>11_05_0066 - 18773852-18774466,18774562-18774840
Length = 297
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 435 RTVVALTTTIPRLMAEIPVDNYSHIHRSIEHLRSIVPTPLDHHRHLATNLADLRR 599
R V ++ T+P ++ +P + ++IHR +E V LDH H D+ R
Sbjct: 13 RAVAEMSPTLPTMIIRVPCEQSANIHRLLE----FVEDRLDHGAHDLIKAEDIPR 63
>03_01_0558 +
4155220-4155642,4156292-4156348,4157030-4157165,
4158378-4158514,4159509-4159632,4160111-4160568
Length = 444
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 573 ATNLADLRRYEHPDEMPEIKPSVLRL-SEFKSGLQDMRSHNEQXNDSHRQLTSQDDGPKG 749
A LA L E P + K S + L S+FK+ L D + D ++++ G +G
Sbjct: 224 AKGLAFLHEAEKPVIYRDFKTSNILLDSDFKAKLSDFGLAKDGPEDDETHVSTRVMGTQG 283
Query: 750 YSAP 761
Y+AP
Sbjct: 284 YAAP 287
>02_04_0123 +
19961904-19962096,19962836-19963029,19963334-19963465,
19963921-19964038,19964248-19964484,19964576-19964658,
19964777-19965004,19965394-19965470,19965590-19965626,
19965786-19965952,19966156-19966234,19966301-19966378,
19967459-19967575,19967999-19968379,19968453-19968590,
19968680-19968769,19968832-19968840
Length = 785
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -3
Query: 425 RWSFLPSSCLIY-FYLNLYIKFGTIFTKICLIRFCVCFTSWNCFEIFRFHWAVTIRKPSQ 249
RW L S+ +++ F+ L + G R VC T ++ + F W++ P
Sbjct: 649 RWLGLASALVLFEFFYALALGGGISIAIQVRPRIAVCATVFSSMVVITFAWSLMFSHPEN 708
Query: 248 SPTYIITVCSYYN 210
++T+ YY+
Sbjct: 709 Q---VVTIAGYYS 718
>02_02_0455 +
10445417-10446931,10447370-10447903,10448198-10448278,
10448699-10448770,10449643-10449669
Length = 742
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 271 SLSENLHNHQLILSQFVPIIMSLKYISHNKVTLTSQHVRKATVQGFKPKITQKI-HVLLE 95
+L++++ NH L+ S F P+I + LT + + A+ + K I HVL E
Sbjct: 238 TLAQHICNHLLVKSHFDPVIWIFVSDDFDVKRLTKEAIESASGKEAKTDHLDSIQHVLRE 297
Query: 94 NKHLKKI 74
N K+I
Sbjct: 298 NVKNKRI 304
>06_01_0928 -
7159857-7159922,7159923-7160024,7160126-7160206,
7160289-7160384,7160462-7160566,7160648-7160722,
7161372-7161431,7161960-7162090,7162175-7162250,
7163390-7163459,7163603-7163664,7163788-7163871,
7163973-7164047,7164448-7164585,7164733-7164791,
7164910-7165123,7167996-7168091,7168701-7169639
Length = 842
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 646 LKTEGLISGISSG-CSYRLKSARFVARCL*WSKGVGTIDLKCSML 515
LK G I + G C + A FVA CL ++ + T+DL+ + L
Sbjct: 713 LKFNGKIQTLKLGWCQIGVSGAEFVADCLKYNTTLSTLDLRANGL 757
>09_02_0250 +
6266818-6267029,6267230-6267287,6267999-6268118,
6272359-6272511,6273381-6273586,6274280-6274733,
6276573-6276610,6276923-6277046,6277184-6277246,
6277350-6277412,6277526-6278152,6278267-6278294,
6278373-6278413,6278689-6278851,6278987-6279039,
6279217-6279262,6279373-6279444,6279578-6279741,
6279968-6280099,6280249-6280565,6280721-6280892,
6281009-6281107,6281275-6281349,6281446-6281504,
6281647-6281836,6281982-6282020
Length = 1255
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 157 RKATVQGFKPKITQKIHVLLENKHLKK 77
RK VQ K K+ + +VLLEN+ +KK
Sbjct: 474 RKTIVQSMKRKMKKNSNVLLENQKMKK 500
>01_06_1723 -
39443176-39443505,39443615-39443710,39443834-39443902,
39444381-39444443,39444521-39444598,39444725-39444838,
39445727-39445804,39446457-39446522,39446739-39446804,
39446896-39447003,39447355-39447432,39447951-39448010,
39448087-39448191,39448407-39448595,39448922-39448985,
39449244-39449385,39449494-39449654,39449952-39450076,
39450230-39450300,39450410-39450560,39450713-39450769,
39451049-39451143,39451331-39451379
Length = 804
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 28 YLQGSXARLAFFLGPRFFLNVY 93
Y Q +LA LGPRF+LN+Y
Sbjct: 586 YFQYFLDKLAASLGPRFYLNIY 607
>12_02_1279 + 27510605-27513301
Length = 898
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 485 YFGHQXGNCGSQGHHRPACNRWSFLPSSCLIYFYLN 378
YF ++ + + G PAC SCL +FY N
Sbjct: 376 YFANKFASPDTSGEELPACRNLCSANCSCLGFFYRN 411
>12_01_0860 - 8082481-8082792,8083748-8083816
Length = 126
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 540 VPTPLDHHRHLATNLADLRRYEHPDE-MPEIKPSVLRLSEFKSGLQ 674
+P P+ H RH+ T + H P+I S LS+FK +Q
Sbjct: 60 LPMPVAHRRHVPTGMPVYPSQTHSSTFQPQISTSRETLSQFKERVQ 105
>05_04_0397 - 20937280-20937386,20937494-20939681
Length = 764
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 414 PSIILSNLFLSKFVYKIWHYLYK 346
P +IL +FL F+ +W+Y YK
Sbjct: 645 PELILPTIFLYMFMIGLWNYRYK 667
>03_02_0619 +
9904405-9904586,9905315-9906764,9907320-9907509,
9909578-9910164
Length = 802
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 745 LGPSSCDVSCLWESFXCSLCDLISCKPLLNSLNLKTE--GLISGISSGCSYR 596
L P + + SC F C+L D+ + + L++ L+ E L S SG SYR
Sbjct: 585 LEPPTDEDSCCSGYFKCNLQDMPNVEKLIDDCELRYEQVSLSSDDDSGSSYR 636
>01_01_0324 -
2613396-2613452,2613658-2613750,2614045-2614236,
2614325-2614398,2615846-2616098,2616179-2616249,
2616878-2617042,2617440-2617469,2617867-2617947,
2618047-2618272
Length = 413
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 401 KMMEGRTIDYRPDGG 445
K+M G T+DY+P+GG
Sbjct: 170 KVMSGETLDYKPEGG 184
>10_08_0331 - 16831646-16834756
Length = 1036
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2
Query: 495 CLLVFRPSXGELW*SRPPPSGL*SMVLPSIILSNLFLSKFVYKI 364
CL V S LW S P L + V PSI +NL L F +I
Sbjct: 924 CLSVLNLSNNRLWGSIPTGRQLQTFVDPSIYSNNLGLCGFPLRI 967
>07_01_1211 -
11546407-11546466,11546550-11546618,11546777-11546865,
11547046-11547142,11547238-11547391,11548295-11548409,
11549182-11549250,11549996-11550110
Length = 255
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -1
Query: 145 VQGFKPKITQKIHVLLENKHLKKISAQEKRRVVXLXPAGKIMNAHR 8
+Q + T + HVL + KHL +++ +E +V+ GK+ R
Sbjct: 65 LQKMPKRKTDRAHVLDKKKHLSRLNVKEAGKVLLKRGEGKLEKQFR 110
>02_04_0488 +
23397480-23397687,23397777-23397805,23398462-23398564,
23398811-23398982,23399380-23399440,23399757-23399889,
23400438-23400709,23400776-23400843,23401096-23401235,
23401413-23401499,23401580-23402088,23402173-23402990,
23403024-23403222,23403662-23403817
Length = 984
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 228 CDNISW*L*RFSDSDSPMKTEDLETIP*RKANAKSNKTYFCKDSAK 365
C+N+ W S + ++D+E I K + NK + C+ AK
Sbjct: 462 CENVEWDFGVLSPKEITAPSKDVELISKLKPSLPENKKHACERRAK 507
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,748,506
Number of Sequences: 37544
Number of extensions: 435739
Number of successful extensions: 1217
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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