Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_E03
         (778 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            26   1.1  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            26   1.1  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    24   4.6  
AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.          24   4.6  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.6  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.6  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   4.6  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    23   8.0  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 289  KISKQFHDVKQTQNRIRHI 345
            +I KQFHD+KQT    R +
Sbjct: 3197 QIDKQFHDLKQTVQEYRQL 3215


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 289  KISKQFHDVKQTQNRIRHI 345
            +I KQFHD+KQT    R +
Sbjct: 3200 QIDKQFHDLKQTVQEYRQL 3218


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = -2

Query: 417  LPSIILSNLFLSKFVYKIWHYLYKNM---SYSILRLLYVMELFRDLPFS 280
            L ++I + +F  +FV+K+  + +KN    ++++   + V+  F D+ +S
Sbjct: 1209 LLNLIFTAVFALEFVFKLAAFRFKNYFGDAWNVFDFIIVLGSFIDIVYS 1257


>AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -2

Query: 411 SIILSNLFLSKFVYKIWHYLYKNMSYSILRLLYVMELFRDLP 286
           +++ +++ + K   +I  ++Y+   Y   RLL +M   RD+P
Sbjct: 176 NLMPASMPIDKLHEQIVRFVYRVTIYQDQRLLNLMRFVRDIP 217


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 59  FFLGRDFF*MFIFEEHVDFLSN 124
           FF+G+DF   F+F +   ++ N
Sbjct: 347 FFIGKDFLPRFLFMKRPPYIEN 368


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 59  FFLGRDFF*MFIFEEHVDFLSN 124
           FF+G+DF   F+F +   ++ N
Sbjct: 347 FFIGKDFLPRFLFMKRPPYIEN 368


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 462  IPRLMAEIPVDNYSHIHRSIEHLRSIVPTPLDHHRHLATNLADLRRY 602
            + ++M +I    +SH+H+   H+   V       +H  TN+  +R Y
Sbjct: 960  LTQMMRDIRKSRFSHLHKLTTHMALRV-------KHKFTNIMQIRNY 999


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +3

Query: 516 SIEHLRSIVPTPLDHHRHLATNLADLRRYEH 608
           S+ H     P    HH H     ADL  Y H
Sbjct: 493 SLTHSHHAHPHHHHHHHHHHPTAADLAGYHH 523


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 821,842
Number of Sequences: 2352
Number of extensions: 17738
Number of successful extensions: 39
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81081585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)