Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_E03
(778 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23171-1|AAC46702.2| 334|Caenorhabditis elegans Serpentine rece... 32 0.53
EU052683-1|ABU48856.1| 249|Caenorhabditis elegans heparan sulfa... 31 0.92
EU052682-1|ABU48855.1| 278|Caenorhabditis elegans heparan sulfa... 31 0.92
AF098987-1|AAC67432.1| 276|Caenorhabditis elegans Heparan sulph... 31 0.92
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 3.7
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 3.7
AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical ... 28 6.5
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr... 28 8.6
>U23171-1|AAC46702.2| 334|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 55 protein.
Length = 334
Score = 31.9 bits (69), Expect = 0.53
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = -1
Query: 394 FISI*ICI*NLALSLQKYVLFDFAFALRHGIVSRSSVFIGLSLSENLHNHQLIL----SQ 227
F+ + +C+ L + ++F F ALR G VSRS +F +SL+ + +IL S
Sbjct: 101 FLGVALCV---GLGISNTIIFRFQ-ALRKGRVSRSRIFTMISLTYIPSSITIILPFTSSW 156
Query: 226 FVPIIMSLKYISHNKVTLT 170
+ SL YI H K L+
Sbjct: 157 DFEKVRSLTYIEHPKYDLS 175
>EU052683-1|ABU48856.1| 249|Caenorhabditis elegans heparan sulfate
3-O sulfotransferaseisoform b protein.
Length = 249
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 371 IKFGTIFTKICLIRFCVCFTSWNC-FEIFRFHWAVTIRKPSQS 246
+KF T CL+ +CF +N F F+F W + + K +S
Sbjct: 2 VKFSTRCVVACLLTIGMCFLQYNLFFRNFKFKWWIDLGKGEKS 44
>EU052682-1|ABU48855.1| 278|Caenorhabditis elegans heparan sulfate
3-O sulfotransferaseisoform a protein.
Length = 278
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 371 IKFGTIFTKICLIRFCVCFTSWNC-FEIFRFHWAVTIRKPSQS 246
+KF T CL+ +CF +N F F+F W + + K +S
Sbjct: 2 VKFSTRCVVACLLTIGMCFLQYNLFFRNFKFKWWIDLGKGEKS 44
>AF098987-1|AAC67432.1| 276|Caenorhabditis elegans Heparan
sulphotransferase protein 3 protein.
Length = 276
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 371 IKFGTIFTKICLIRFCVCFTSWNC-FEIFRFHWAVTIRKPSQS 246
+KF T CL+ +CF +N F F+F W + + K +S
Sbjct: 2 VKFSTRCVVACLLTIGMCFLQYNLFFRNFKFKWWIDLGKGEKS 44
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +3
Query: 453 TTTIPRLMAEIPVDNYSHIHRSIEHLRSIVPTPLDH--HRHLATNLADLRRYEHPDEMPE 626
TTT+ R E P D++SH+ S E+ S P P + R + T EH D +
Sbjct: 4966 TTTVSREHFE-PEDDHSHVVESQEYSASGSPVPSEKSVERVIETTTTTTVTREHFDTEED 5024
Query: 627 IKPSVLRLSEFKSGLQD 677
PS R S G+ D
Sbjct: 5025 YIPSESRTSH-DDGITD 5040
Score = 27.9 bits (59), Expect = 8.6
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Frame = +3
Query: 420 PSITGRTVVALTTTIPRLMAEI-PVDNYSHIHRSIEHLRSIVPTPLDHH-----RHLATN 581
P V+ TTT + P D++SH+ S E+ S P P + T
Sbjct: 5774 PEEDSSRVIETTTTTTFIREHFEPEDDHSHVVGSQEYSASGSPVPSEKSVERVIETTTTT 5833
Query: 582 LADLRRYEHPDEMPEIKPSVLRLSEFKSGLQDMRSHNEQXN---DSHRQLTSQDD 737
+EH DE ++ +V SE S + + E+ + ++H++ +++D+
Sbjct: 5834 TVTSEHFEHEDEHAQLHDTV--SSEKTSSSEPVEQTLEEADITEETHQRFSAEDE 5886
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +3
Query: 453 TTTIPRLMAEIPVDNYSHIHRSIEHLRSIVPTPLDH--HRHLATNLADLRRYEHPDEMPE 626
TTT+ R E P D++SH+ S E+ S P P + R + T EH D +
Sbjct: 4966 TTTVSREHFE-PEDDHSHVVESQEYSASGSPVPSEKSVERVIETTTTTTVTREHFDTEED 5024
Query: 627 IKPSVLRLSEFKSGLQD 677
PS R S G+ D
Sbjct: 5025 YIPSESRTSH-DDGITD 5040
Score = 27.9 bits (59), Expect = 8.6
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Frame = +3
Query: 420 PSITGRTVVALTTTIPRLMAEI-PVDNYSHIHRSIEHLRSIVPTPLDHH-----RHLATN 581
P V+ TTT + P D++SH+ S E+ S P P + T
Sbjct: 5774 PEEDSSRVIETTTTTTFIREHFEPEDDHSHVVGSQEYSASGSPVPSEKSVERVIETTTTT 5833
Query: 582 LADLRRYEHPDEMPEIKPSVLRLSEFKSGLQDMRSHNEQXN---DSHRQLTSQDD 737
+EH DE ++ +V SE S + + E+ + ++H++ +++D+
Sbjct: 5834 TVTSEHFEHEDEHAQLHDTV--SSEKTSSSEPVEQTLEEADITEETHQRFSAEDE 5886
>AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical
protein Y75B8A.4 protein.
Length = 773
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 112 IHVLLENKHLKKISAQEKRRVVXLXPAG 29
IH +L+NKH+K++ EK R + PAG
Sbjct: 567 IHKILKNKHMKRVKIVEKMRPL---PAG 591
>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
protein T06E4.1 protein.
Length = 1295
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 624 EIKPSVLRLSEFKSGLQDMRSHNEQXNDSHRQ 719
EIK L L FK + + S NE+ N SH++
Sbjct: 840 EIKQLQLDLQNFKQNAEVLESLNEKLNSSHKR 871
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,957,389
Number of Sequences: 27780
Number of extensions: 397599
Number of successful extensions: 1175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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