Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_E01
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 40 0.002
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 40 0.002
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical p... 29 2.5
U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 29 4.4
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 28 5.9
U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical pr... 28 5.9
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 28 5.9
AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical ... 28 5.9
U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF025458-4|AAB70975.4| 374|Caenorhabditis elegans Hypothetical ... 28 7.8
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 39.5 bits (88), Expect = 0.002
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 7/155 (4%)
Frame = +1
Query: 226 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 405
EG+ + + + +D +L++Y R +R QA+RK++
Sbjct: 46 EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105
Query: 406 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 585
EEK+++ EE KK Q M+ + G NF IQKK
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164
Query: 586 ENFGLSN-------AQLERNKTKEQLEXEXKISLS 669
E+ G+ + A+ E TKEQ E ++++
Sbjct: 165 ESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMA 199
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 39.5 bits (88), Expect = 0.002
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 7/155 (4%)
Frame = +1
Query: 226 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 405
EG+ + + + +D +L++Y R +R QA+RK++
Sbjct: 46 EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105
Query: 406 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 585
EEK+++ EE KK Q M+ + G NF IQKK
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164
Query: 586 ENFGLSN-------AQLERNKTKEQLEXEXKISLS 669
E+ G+ + A+ E TKEQ E ++++
Sbjct: 165 ESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMA 199
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
F35G12.8 protein.
Length = 1549
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 472 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXE 651
+E+K++ +EE EKKR + + A IQ K + Q R++ KE L+
Sbjct: 869 LEDKQKIVEELEKKRDEL--GEEAAKVKARQAEIQSKLDGIFKELVQCHRDEAKESLQKR 926
Query: 652 XKISLSI 672
K+ I
Sbjct: 927 QKLEKDI 933
>Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical
protein C54D10.12 protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +1
Query: 475 EEKRQRLEEAEKKRQAMLQAMKDAS------KTGPNFTIQKKSENFGLSNAQLERNKTKE 636
EEK Q++ E E+K Q +L K+ + + + I++K E N Q R K E
Sbjct: 208 EEKLQQIREKERKLQELLLRQKEEAEEEALRRLANDSEIEQKLEKIRYENEQQARQKDNE 267
Query: 637 Q 639
Q
Sbjct: 268 Q 268
>U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical
protein F27C1.6 protein.
Length = 647
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 469 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLER 621
D E+ ++ ++E EK + L S GP T +K+ +NF + + R
Sbjct: 514 DFEDMKEGVKEKEKVKDVDLNLAGWGSWVGPGMTEKKRRQNFVIKAKEKRR 564
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/54 (22%), Positives = 31/54 (57%)
Frame = +1
Query: 475 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE 636
+EK+Q+L+E EK+R+ + Q ++ ++ +E+ +++ ++ K +E
Sbjct: 216 KEKKQKLKEMEKRREKLRQKERELLAVSDKVKKEEPAESSDEEDSRKDQRKPRE 269
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 472 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQ-KKSENFGLSNAQLERNKTKEQLEX 648
IE+ Q+LEEAEK+ + + +AS + + T+ K+SE L E N E+L+
Sbjct: 648 IEDAVQKLEEAEKRAREL-----EASVSSRDTTVSTKESELSELKGKLTESNSFIEELKV 702
Query: 649 E-XKISLSIRIXPLTIEGLSVD 711
+ K+S I +E L +
Sbjct: 703 QVEKVSNEISEKQQEVENLMAE 724
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 472 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQ-KKSENFGLSNAQLERNKTKEQLEX 648
IE+ Q+LEEAEK+ + + +AS + + T+ K+SE L E N E+L+
Sbjct: 650 IEDAVQKLEEAEKRAREL-----EASVSSRDTTVSTKESELSELKGKLTESNSFIEELKV 704
Query: 649 E-XKISLSIRIXPLTIEGLSVD 711
+ K+S I +E L +
Sbjct: 705 QVEKVSNEISEKQQEVENLMAE 726
>U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical
protein F23F12.8 protein.
Length = 980
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +1
Query: 478 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXEXK 657
E+R++LEE+E RQA L +++ E L +LE K + + + +
Sbjct: 337 ERRRKLEESETARQAELDRQATIYAEQERMAMERNRE---LERIRLEEKKRENERVRQEE 393
Query: 658 ISLSI 672
I++ I
Sbjct: 394 IAMEI 398
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 472 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQ-KKSENFGLSNAQLERNKTKEQLEX 648
IE+ Q+LEEAEK+ + + +AS + + T+ K+SE L E N E+L+
Sbjct: 650 IEDAVQKLEEAEKRAREL-----EASVSSRDTTVSTKESELSELKGKLTESNSFIEELKV 704
Query: 649 E-XKISLSIRIXPLTIEGLSVD 711
+ K+S I +E L +
Sbjct: 705 QVEKVSNEISEKQQEVENLMAE 726
>AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical
protein Y6E2A.8 protein.
Length = 444
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 481 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXEXKI 660
KR+ ++ AEK ++A L+ K++SK+ +KK + + K+ + E K
Sbjct: 323 KRETMKRAEKMKEAELKKKKESSKSKEEDKNKKKEVKIKSAPKTSAKKSAKKSAKKEQKK 382
Query: 661 S 663
S
Sbjct: 383 S 383
>U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical
protein M02B7.5 protein.
Length = 640
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 248 SVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNAL 352
S+K +G N+STNG N+ RR+S N+L
Sbjct: 594 SMKLSNGSNSSAGSSNSSTNGVNNSSFRRLSFNSL 628
>AF025458-4|AAB70975.4| 374|Caenorhabditis elegans Hypothetical
protein C01B12.2 protein.
Length = 374
Score = 27.9 bits (59), Expect = 7.8
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Frame = +1
Query: 478 EKRQRLEEAEKKRQAMLQAMKDASKTGP----NFTIQKKSENFGLSNAQLERNKTKEQL- 642
E ++R EEAE+K Q A+K +T N TIQ K+ L +E + L
Sbjct: 220 ENQKRQEEAERKLQEKQNAIKCLMETDSVTFWNQTIQSKTSTVVLDRISMELGSLAQNLI 279
Query: 643 -EXEXKISLSIRIXPLTIEGLS 705
+ S S I L + GLS
Sbjct: 280 SGRDFAASSSKIIQVLQVLGLS 301
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.131 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,828,990
Number of Sequences: 27780
Number of extensions: 157260
Number of successful extensions: 739
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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