Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D22
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    27   4.3  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   5.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.7  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    26   7.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   9.9  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   9.9  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   9.9  

>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +1

Query: 166 AETKHTRCQPEIFASD--QTWCNSSFIYNPKFEKFEEQH 276
           +E K   CQ ++   D   TWC       PKFE+F   +
Sbjct: 9   SEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTY 47


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 385 KPIEHFPLDVYFLMDNSYTMRQFQNELKSQAINILKELSA 504
           +PI +FP+  Y L D S ++++ Q+ LKS    ++  LS+
Sbjct: 73  QPISNFPVLQYILCDKS-SLQEKQSRLKSGYKTVIFALSS 111


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 356  VFQSILKCFINL*SISRSMFIFSWITLI 439
            ++  IL+CF+ +   S   F F+W++LI
Sbjct: 1737 IYSVILECFLAIQPRSFPAFTFAWLSLI 1764


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 409 DVYFLMDNSYTMR-QFQNELKSQAINILKELSAFTKNVRLGFGTFVEKPVYPYYDKNRYQ 585
           D Y  + NS T R +    L    I   K+L + +KN    +    +  V+PY D N ++
Sbjct: 29  DAYMGLCNSLTYRFEGWRHLVENLIAFFKQLESTSKNNAKEYMKLSKVIVHPYKDANVFE 88

Query: 586 K 588
           +
Sbjct: 89  E 89


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 10  SCRAHEAMFRLTKVTVLMIYFCFASGTSICGQFKTCSSCI 129
           S R+   +FR     VL+ +    +G+SICG+    SS I
Sbjct: 313 SIRSMRDIFREESCAVLLEWLADIAGSSICGKRNYFSSVI 352


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 283 YQSVDDHGRKTIVTPGHIKIKVRPGVPV 366
           Y S   HG KT VTP HIK   +P +P+
Sbjct: 583 YGSFKHHG-KTFVTPPHIK---KPEIPL 606


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 189 TSSVFCFSLATPDAP 145
           TSSV CF  AT DAP
Sbjct: 119 TSSVACFPYATSDAP 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,268
Number of Sequences: 5004
Number of extensions: 76164
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)