Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D22
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124...    35   0.069
03_02_0182 - 6216991-6217238,6218076-6218197,6218412-6218497,621...    31   1.5  
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    29   3.4  
02_02_0295 - 8658442-8658909,8659041-8659273,8661052-8661112           29   6.0  
12_02_0127 + 13961726-13961947,13962050-13962121,13962288-139630...    28   7.9  

>01_01_0136 +
           1237623-1237820,1238313-1239001,1239978-1240308,
           1240614-1241351
          Length = 651

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 112 TCSSCISYASERCVWCSEAETKHTRCQ 192
           TCS+C++   + C WC   E   TRC+
Sbjct: 74  TCSTCVAEMGQECQWCRAPEATTTRCR 100


>03_02_0182 -
           6216991-6217238,6218076-6218197,6218412-6218497,
           6219105-6219218
          Length = 189

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 121 SCISYASERCVWCSEAETKHTRCQPEIFASDQTWC 225
           SC S+   R  W   A  +H RC+P + A    WC
Sbjct: 51  SCSSH--RRSYWGFSAGERHVRCRPMVLADAGRWC 83


>10_06_0105 -
           10790092-10790323,10791092-10791234,10791322-10791429,
           10791796-10791903,10793133-10797686,10798347-10798461,
           10799597-10799724,10799843-10800043,10800158-10800227,
           10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 697 SQLLGHRNLNQNRFGELCCSISICLPLRIIHFQT---VWTF 584
           S +LG  ++N   F E    +SI LPLR   F T   VW F
Sbjct: 170 SSILGELDVNLAEFAEALKPVSIALPLRGCEFGTILHVWEF 210


>02_02_0295 - 8658442-8658909,8659041-8659273,8661052-8661112
          Length = 253

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 730 WCRS*PASEHXSQLLGHRNLNQNRFGEL 647
           WCR  P S   S++ GH   +QN  G L
Sbjct: 39  WCRMDPKSLQQSEVDGHEGCSQNMLGYL 66


>12_02_0127 +
           13961726-13961947,13962050-13962121,13962288-13963058,
           13963401-13963573,13963973-13964083,13964114-13964460,
           13964627-13964652
          Length = 573

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +2

Query: 266 KNNTCPIKVLMITAERRSSHRVTSKLKYDLVFQSILKCFINL*SISRSMFIFSW 427
           K+N CP+      +E  +S       +Y+ + ++I +CF    S++R+  + +W
Sbjct: 431 KSNWCPLIQTTARSEGTNSSVSAFLAQYERIAETIYECFKEQESLTRNTVLDTW 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,262,714
Number of Sequences: 37544
Number of extensions: 428318
Number of successful extensions: 874
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)