Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D19
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   0.38 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.2  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   2.0  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   3.5  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 23/72 (31%), Positives = 32/72 (44%)
 Frame = +1

Query: 307 YRCELFFKSADGPNETCFAMRGFQNIPITVVMTPLGDTAIINAILKSLKMETHSTCLRIT 486
           YR E  + S+D P  TCF   G  N   T+    +  T   N  L+ +  E  + C+  T
Sbjct: 680 YRQEAQWTSSDNPCTTCFCENG-NNKCFTMECPQV--TCPDNMKLEKVPGECCAICVNAT 736

Query: 487 QYVVSSTVENVP 522
             V S+   NVP
Sbjct: 737 SLVESN--RNVP 746


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 763 YTIHAINNCHLSLFLVHYTFC 701
           +T+H +  C   +F VH+  C
Sbjct: 79  FTVHLLFYCPFIIFTVHFLLC 99



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 462 PFYMFTYHSICCIKY 506
           PF +FT H + C  Y
Sbjct: 88  PFIIFTVHFLLCTYY 102


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 426 YKCYPQKLKNGDPFYMFTY 482
           Y C P+KL  G PFY  T+
Sbjct: 255 YGCSPKKLIVGIPFYGRTF 273


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 679 VEDILSLCKTCNALKTMIDD 738
           VE ILS+  TC+ + + ++D
Sbjct: 325 VEHILSIVNTCSQIPSEVED 344


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,091
Number of Sequences: 336
Number of extensions: 3909
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)