Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D19
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    34   0.019
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    31   0.24 
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    28   1.3  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    27   2.9  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    27   2.9  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   5.1  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   6.8  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   9.0  

>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 646 EILWKILLNLPVEDILSLCKTCNALKTMIDDNCLWH 753
           +IL +I   L  +DI+ L +TC +L  + DD  +WH
Sbjct: 12  DILLEISTYLDYKDIVHLSETCKSLSYVFDDKTIWH 47


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 523 SMFRDLKNFAHTVKNNIISPVKS-SILKYYGYPSASLVGIPEEILWKILLNLPVEDILSL 699
           S+ +++ +F HT     ISP K+ +   ++ +   +L   P  +L  +  N P+E I S+
Sbjct: 574 SVAKEISHFVHTTNRKHISPKKAVTGQSWFDHQYENLASSPHPLLVGVFQNQPLEYIRSI 633

Query: 700 CKTCN 714
               N
Sbjct: 634 IAEVN 638


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = +1

Query: 571 IISPVKSSILKYYGYPSASLVGI------PEEILWKILLNLPVEDILSLCKTCNALKTMI 732
           I++   SS+L +      SLV +      P EI ++IL  L    +    +     K + 
Sbjct: 85  ILNNCSSSLLSFASSTLDSLVRLDFLSLLPVEISFRILSFLDARSLCQAAQVSKHWKELA 144

Query: 733 DDNCLWHEL 759
           DD+ +WH +
Sbjct: 145 DDDVIWHRM 153


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 136 VPKLLENIIKSILERKKSKPIEKIDILCGLL 228
           +PKLL+ +   +++    K +E   ILCG L
Sbjct: 265 LPKLLKKVFLDVVKPNTKKNLETCGILCGKL 295


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 625 SLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMIDDNCLWHELY 762
           +++ +P+EIL  I   L    +LS   TC   K ++ D+  W   +
Sbjct: 30  TVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRTAF 75


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 333 CRWSK*NLLCYAWFSKHTHYSCYDTFRGH 419
           C W K +LL     S       YDTFRGH
Sbjct: 340 CPWQK-SLLAVGTGSNDQQIYFYDTFRGH 367


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 217 CGLLIAMLIENNLIHLNDSGGTKDNIPPEN 306
           C  L+  L+E  L+HL+  G T  +I PEN
Sbjct: 271 CKPLLKQLLET-LLHLHKQGVTHRDIKPEN 299


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 606 LWLP*CKLSGNTRRNFMEDIVEFTS*GHFKSLQNV 710
           LW P   ++GN +RN ++DI+  T+   ++ +Q +
Sbjct: 763 LWSP--TIAGNNKRNLLKDIIIHTA--KYRDMQRI 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,312
Number of Sequences: 5004
Number of extensions: 63515
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)