Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D18
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   2.7  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    27   2.7  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   6.2  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   6.2  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   8.2  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    25   8.2  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    25   8.2  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 219 FSIYLPPQAEGGDVKLPLLYY 281
           F+ Y+PP+  GGD+ +P  +Y
Sbjct: 20  FNGYVPPEQNGGDIVVPKDFY 40


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 336 RYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVS 437
           RY  + G IV+   ++PR +K +GD   +DF +S
Sbjct: 219 RYCLQRGFIVLPKSSTPRRIKENGD--VFDFEIS 250


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 439 ALTPKSHDESSPSILTPRGEVSGPTTITPCSAAYLWKPDLVMKFCSLQVRP 287
           A TP    +SS    TP   +S   ++TP S+A L+ P +  +  +  V+P
Sbjct: 669 ASTPAVTAKSSFHYATPTSGLSNFNSVTPSSSASLYPPLIPSEARTPSVQP 719


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = +3

Query: 156 IFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQNFITKSGFQ 335
           IF  Y  +YS AS  +      S Y P +  GG   + +LY L+ +      F+      
Sbjct: 564 IFTSYVLIYSFASIRIS-----SFYSPAKVWGGAFLVYILYSLAHVWVVAYEFVPGGPIL 618

Query: 336 RYAAEHGVIVVG 371
           R    + +I +G
Sbjct: 619 RERTSYILIFIG 630


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 315 ITKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWD--FGVSAGFYLDATNEPWNNNYR 488
           I+ SGF++Y   +      PD  P  V  +  +  WD  F VS G +   +     +  R
Sbjct: 308 ISISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFAVSDGQFKQVSFVNNISTIR 367

Query: 489 MGSYLN 506
            G+++N
Sbjct: 368 GGTHVN 373


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 360 IVVGPDTSPRGVKIDGDDSSWDFGVSA 440
           +++    S R + I G+D+ W  G+SA
Sbjct: 115 VILATGASARRLHITGEDTYWQAGISA 141


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 535 AFKIKSYNSTFK*L-PIL*LLFHGSFVASK*KPALTPKSHDESSP 404
           A + K+Y +  K L PIL  LF+GS+ +SK K  LT +      P
Sbjct: 98  ASRNKNYGTEKKPLNPILGELFYGSWDSSKGKVELTAEQVSHHGP 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,759
Number of Sequences: 5004
Number of extensions: 61753
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)