Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_D18
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0129 + 41243686-41243853,41243936-41244053,41245485-412455... 120 1e-27
01_07_0130 + 41262652-41262798,41262958-41263056,41263155-412632... 56 2e-08
12_02_1237 + 27245411-27245842 32 0.52
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 32 0.52
07_03_0840 + 21935504-21936424,21936516-21938177 28 6.4
07_03_0839 + 21916842-21917852,21917944-21919602 28 6.4
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 28 6.4
04_01_0575 - 7454421-7455707 28 8.5
02_01_0314 + 2106976-2107658,2107792-2107931,2108367-2108636,210... 28 8.5
>01_07_0129 +
41243686-41243853,41243936-41244053,41245485-41245532,
41245756-41245787
Length = 121
Score = 120 bits (289), Expect = 1e-27
Identities = 53/102 (51%), Positives = 73/102 (71%)
Frame = +3
Query: 129 SLQLXSSNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQ 308
+L+ S K+FGG+ + H S+ L C M FS++LPP LP+LY+LSGLTC+++
Sbjct: 13 ALEQMSRTKMFGGHNLRFRHHSATLGCPMTFSVFLPPSPASD---LPVLYWLSGLTCNDE 69
Query: 309 NFITKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGV 434
NF+TK+G QR AA HG+ +V PDTSPRG+ I+G+ SWDFGV
Sbjct: 70 NFVTKAGAQRAAAAHGIALVAPDTSPRGLNIEGEADSWDFGV 111
>01_07_0130 +
41262652-41262798,41262958-41263056,41263155-41263220,
41264073-41264255
Length = 164
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/39 (61%), Positives = 28/39 (71%)
Frame = +3
Query: 600 ALVSTLRNPGQYKSVSAFAPICNPSACPWGVKAFXGYLG 716
AL L+N +YKSVSAF+P+ NP CPWG KAF YLG
Sbjct: 37 ALTIYLKNTDKYKSVSAFSPVVNPINCPWGQKAFSNYLG 75
>12_02_1237 + 27245411-27245842
Length = 143
Score = 31.9 bits (69), Expect = 0.52
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 417 SWDFGVSAGFYLDATNEPWNNN 482
++DFG+ AGF++ TN P+N +
Sbjct: 42 AYDFGIPAGFFVPGTNNPYNGD 63
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 31.9 bits (69), Expect = 0.52
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 417 SWDFGVSAGFYLDATNEPWNNNYRMGSYLN 506
SW +G+ G Y + N PW +N +++N
Sbjct: 1287 SWQYGLDQGLYSEGKNYPWFSNGSSNAFIN 1316
>07_03_0840 + 21935504-21936424,21936516-21938177
Length = 860
Score = 28.3 bits (60), Expect = 6.4
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Frame = +3
Query: 162 GGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQNFITKSGFQRY 341
G Q + +H S + + + S P G DV+LP+L Y+S N K+G
Sbjct: 304 GIVQVLLNHPSCKPRLGLAASAENPVDFSGVDVRLPMLVYISREKRPGYNHQKKAGAMNV 363
Query: 342 AAEHGVIVVGPDTSPRGVKIDGD---DSSWDFGVSAGFYLDATNEPWNN 479
++ +P + DGD ++S F F LD N
Sbjct: 364 MLRVSALL---SNAPFVINFDGDHYVNNSQAFRAPMCFMLDGRGRGGEN 409
>07_03_0839 + 21916842-21917852,21917944-21919602
Length = 889
Score = 28.3 bits (60), Expect = 6.4
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Frame = +3
Query: 162 GGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQNFITKSGFQRY 341
G Q + +H S + + + S P G DV+LP+L Y+S N K+G
Sbjct: 334 GIVQVLLNHPSCKPRLGLAASAENPVDFSGVDVRLPMLVYISREKRPGYNHQKKAGAMNV 393
Query: 342 AAEHGVIVVGPDTSPRGVKIDGD---DSSWDFGVSAGFYLDATNEPWNN 479
++ +P + DGD ++S F F LD N
Sbjct: 394 MLRVSALL---SNAPFVINFDGDHYVNNSQAFRAPMCFMLDGRGRGGEN 439
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 225 IYLPPQAEGGDVKLP-LLYYLSGLTCSEQNFITKSGFQRYAA 347
++LP A+GG LP ++Y+ G C+E F + RYAA
Sbjct: 69 LFLPSGADGGRRLLPVVVYFHGGCFCTESAF--GRTYHRYAA 108
>04_01_0575 - 7454421-7455707
Length = 428
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 228 YLPPQAE-GGDVKLPLLYYLSGLT 296
+LP A+ GGD LPLL YL+ LT
Sbjct: 50 HLPANADDGGDTPLPLLPYLAHLT 73
>02_01_0314 +
2106976-2107658,2107792-2107931,2108367-2108636,
2109938-2110254
Length = 469
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 414 SSWDFGVSAGFYLDATNEPWN 476
SSWD V GF AT PW+
Sbjct: 297 SSWDNPVPGGFKFTATKAPWS 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,760,623
Number of Sequences: 37544
Number of extensions: 403914
Number of successful extensions: 797
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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