Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D18
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 303 HYKLDQTNNIEVVISHHPLLPE-GGDR*KNSFCI 205
           H  L++TNNI  +++  P+L E   DR +N   +
Sbjct: 259 HSILNRTNNIFELVTVEPILTERPSDRQRNEILL 292


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 390 HVVKYQDLRQLHHVRLHTSGNQI***SFVHYKLDQTNNIEVVISHHPL 247
           H V+ QD+ Q H + +HT         F   +L +  NI   ++  PL
Sbjct: 383 HAVRNQDVVQTHVLTIHTIPEVKVTPRFQAKRLKEEANIRCHVAGEPL 430


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 378 TSPRGVKIDGDDSSWDFGVSAGFYLDATNEP 470
           T+P G +I+    + DFG  A F  +    P
Sbjct: 305 TAPLGAEIEPSTQTIDFGRPATFTCNVRGNP 335


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 135 ASCPCLIXDEPPEKXDAQ 82
           +SC CL  DE  E  D Q
Sbjct: 324 SSCSCLDCDEIRESLDTQ 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,940
Number of Sequences: 438
Number of extensions: 4544
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)