Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D16
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594...    60   2e-09
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535...    54   1e-07
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515...    46   3e-05
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605...    43   2e-04
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691...    31   1.0  
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152...    28   9.4  

>04_04_1432 -
           33558895-33559023,33559215-33559286,33559405-33559494,
           33559574-33559618,33559693-33559788,33559905-33559956,
           33560044-33560132,33560226-33560342,33560448-33560534,
           33560646-33560761,33560854-33560878,33561816-33562121
          Length = 407

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 28/71 (39%), Positives = 40/71 (56%)
 Frame = +3

Query: 432 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMTLWRTSMGQ 611
           W+ KM+ YN+ GGK  RG++ V SY  + +  +V +    +AC LGWCVE   W  +   
Sbjct: 99  WVAKMMDYNVPGGKLNRGLSVVDSYMLLRQGTEVDDEDFYLACVLGWCVE---WLQASAL 155

Query: 612 HLDHVTGNRKT 644
            LD +T N  T
Sbjct: 156 VLDDITDNAYT 166


>01_06_0411 +
           29151647-29151790,29152974-29153039,29153398-29153538,
           29153638-29153724,29153968-29154084,29154177-29154265,
           29154510-29154561,29154667-29154762,29154835-29154879,
           29155002-29155091,29155164-29155235,29155490-29155618
          Length = 375

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 25/68 (36%), Positives = 40/68 (58%)
 Frame = +3

Query: 441 KMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMTLWRTSMGQHLD 620
           KML YN++GGK  RGI+ + S+K ++  + + +    +AC LGWC+E   W  +    LD
Sbjct: 70  KMLDYNVLGGKCNRGISVIDSFKMLKGTDVLNKEETFLACTLGWCIE---WLQAYFLVLD 126

Query: 621 HVTGNRKT 644
            +  N +T
Sbjct: 127 DIMDNSQT 134


>04_04_1431 -
           33551127-33551300,33551362-33551433,33551508-33551597,
           33551671-33551715,33551785-33551880,33552245-33552296,
           33552412-33552500,33552590-33552887,33553007-33553109,
           33553328-33553352,33553503-33553763
          Length = 434

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/46 (41%), Positives = 30/46 (65%)
 Frame = +3

Query: 432 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLG 569
           WL +M+ YN+ GGK  RG++ + SY  +++  +VTE    +AC LG
Sbjct: 84  WLAQMIDYNVPGGKLNRGLSVIDSYLLLKQGSEVTEDDFFLACVLG 129


>05_06_0265 -
           26759960-26760088,26760315-26760386,26760457-26760546,
           26760649-26760693,26760785-26760880,26760980-26761031,
           26761209-26761297,26761388-26761504,26761680-26761737,
           26761834-26761936,26762027-26762051,26762677-26762826
          Length = 341

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 33/52 (63%)
 Frame = +3

Query: 432 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMT 587
           W+ +ML YN+ GGK  RG++ V SYK ++    +++  + +A  LG C ++T
Sbjct: 47  WIDRMLDYNVPGGKCNRGLSVVDSYKLLKGTNVLSQEDMFLASTLG-CFKLT 97


>10_08_1052 -
           22567937-22568329,22568436-22568669,22568787-22569111,
           22569239-22569484,22569576-22569916,22570070-22570150,
           22570275-22570394,22570549-22570650,22570900-22571035,
           22571210-22571362,22572605-22572906
          Length = 810

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 349 FFSLIISRFFEAVVIFALLFLYLI 278
           FFSL I +F  ++ +FAL+F Y+I
Sbjct: 362 FFSLSIRKFLISIAVFALVFFYMI 385


>12_01_1116 +
           11914352-11914415,11915049-11915158,11915254-11915295,
           11916263-11916430,11916506-11916682,11916848-11917051,
           11917125-11917319
          Length = 319

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +3

Query: 351 MFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVIS-YKTIEKPE 527
           MFD+++ EV+  L+N   +  VPQ    L K  +  +     ++G+  +++ Y    KPE
Sbjct: 133 MFDEIVMEVMWGLKNLMHVL-VPQEKMKLSKDDYLPM-----SQGLYMLLNRYGLDVKPE 186

Query: 528 KVTEHTLKMACKLGWC 575
            VT+  +K+AC L  C
Sbjct: 187 MVTDSIIKLACFLLDC 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,885,400
Number of Sequences: 37544
Number of extensions: 399108
Number of successful extensions: 919
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)