Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_D16
(766 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 60 6e-09
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 60 6e-09
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 60 6e-09
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 60 1e-08
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 60 1e-08
Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate sy... 54 6e-07
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 47 8e-05
AL139333-5|CAI15284.1| 2369|Homo sapiens dopey family member 1 p... 38 0.052
AL139333-4|CAM21599.1| 2465|Homo sapiens dopey family member 1 p... 38 0.052
AL121716-2|CAI42426.1| 2369|Homo sapiens dopey family member 1 p... 38 0.052
AL121716-1|CAI42425.2| 2465|Homo sapiens dopey family member 1 p... 38 0.052
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 60.5 bits (140), Expect = 6e-09
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Frame = +3
Query: 267 WPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 437
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 55 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 112
Query: 438 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEM 584
K++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 113 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVEL 161
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 60.5 bits (140), Expect = 6e-09
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Frame = +3
Query: 267 WPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 437
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 54 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 111
Query: 438 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEM 584
K++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 112 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVEL 160
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 60.5 bits (140), Expect = 6e-09
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Frame = +3
Query: 267 WPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 437
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 54 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 111
Query: 438 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEM 584
K++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 112 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVEL 160
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 59.7 bits (138), Expect = 1e-08
Identities = 25/59 (42%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Frame = +3
Query: 417 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEM 584
P+IGD LK++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 29 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVEL 87
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 59.7 bits (138), Expect = 1e-08
Identities = 25/59 (42%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Frame = +3
Query: 417 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEM 584
P+IGD LK++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 36 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVEL 94
>Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate
synthetase like-4 protein.
Length = 348
Score = 54.0 bits (124), Expect = 6e-07
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Frame = +3
Query: 417 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEM 584
P+IGD LK++L YN +GGK+ R +T ++++ + P K +L+ A +GWCVE+
Sbjct: 31 PEIGDAIARLKEVLEYNAIGGKYNRRLTVAVAFRELVDPRKQDADSLQRAWTVGWCVEL 89
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 46.8 bits (106), Expect = 8e-05
Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Frame = +3
Query: 417 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEM 584
P+ GD LK++L YN +GGK+ RG+ +++++ + +P K+ +L+ A +GW ++
Sbjct: 4 PETGDATARLKEVLEYNAIGGKYHRGLMVLVAFRELVEPRKLDADSLQWAPTVGWYAQL 62
>AL139333-5|CAI15284.1| 2369|Homo sapiens dopey family member 1
protein.
Length = 2369
Score = 37.5 bits (83), Expect = 0.052
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 282 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 452
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 453 YNLVGGKHTRGITTV-ISYKTI 515
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL139333-4|CAM21599.1| 2465|Homo sapiens dopey family member 1
protein.
Length = 2465
Score = 37.5 bits (83), Expect = 0.052
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 282 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 452
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 453 YNLVGGKHTRGITTV-ISYKTI 515
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL121716-2|CAI42426.1| 2369|Homo sapiens dopey family member 1
protein.
Length = 2369
Score = 37.5 bits (83), Expect = 0.052
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 282 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 452
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 453 YNLVGGKHTRGITTV-ISYKTI 515
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL121716-1|CAI42425.2| 2465|Homo sapiens dopey family member 1
protein.
Length = 2465
Score = 37.5 bits (83), Expect = 0.052
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 282 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 452
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 453 YNLVGGKHTRGITTV-ISYKTI 515
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,788,123
Number of Sequences: 237096
Number of extensions: 2281796
Number of successful extensions: 4211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4211
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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