Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D16
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    27   0.25 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 432 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMT 587
           W+   +H      +   GITTV++  TI    +     ++ A  L W + M+
Sbjct: 263 WVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMS 314


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = -3

Query: 557 SHFQSMFGDFFRFFNCFV*NHSSYSSCMFTANQIVMKHLFQPIPYLGH 414
           SHF  +FG+ F     F    S+ ++ +      V +++    P++ H
Sbjct: 116 SHFPYVFGEAFCIIQSFAAETSANATVLTITAFTVERYIAICHPFISH 163


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 432 WLKKMLHYNLVGGKHTRGITTVISYKTI 515
           W+   +++     +   GITTV++  TI
Sbjct: 260 WVSFWINHEATSARVALGITTVLTMTTI 287


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 701 CGLVFYNSVVTIQSK*RIVCFSI 633
           CGL F + +++ Q    I+C +I
Sbjct: 655 CGLRFEDPMISFQPGDTIICINI 677


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,116
Number of Sequences: 438
Number of extensions: 5181
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)