Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D06
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   245   3e-65
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    30   1.5  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    30   1.5  
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ...    30   2.0  
AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical...    29   2.6  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  245 bits (599), Expect = 3e-65
 Identities = 111/204 (54%), Positives = 139/204 (68%)
 Frame = +3

Query: 69  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 248
           MGAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQ   
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 249 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 428
                              TYGKPK+HGVN+LK  ++ Q++AE             +SYW
Sbjct: 61  VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120

Query: 429 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHXY 608
           VA+DS+YK++EV+L+DP HKAIRR+P   WI   VHKHRE RGLTSAGR SRGLGKG  +
Sbjct: 121 VAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGLGKGWRF 180

Query: 609 SQTKGGSRRAAWLXRNTLQLRRKR 680
           S T+GGS+   W  +NT    RKR
Sbjct: 181 SATRGGSQAKNWKRKNTKVFHRKR 204


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 438 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 554
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 438 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 554
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y116F11B.3 protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -3

Query: 368  GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFS 231
            GLKVAR   LVD   +G+ + G ++  T  ATT+   + Y  TL+S
Sbjct: 972  GLKVAR--DLVD-QNIGVWLGGQVNITTTTATTTSNSTSYPSTLYS 1014


>AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical
           protein Y47D3A.16 protein.
          Length = 580

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -3

Query: 218 SSGFVRPCGPGSAVHTS---QLTVLPYPHTQQKTHNIAQFFPIQLLNISVGTH 69
           S+   RP   GS+  T       V+  PHT   T N    F + LLN+S+  H
Sbjct: 526 STTTTRPSNVGSSASTPIPLPKRVIKLPHTHTSTQNAQYSFMLLLLNVSLFFH 578


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,855,224
Number of Sequences: 27780
Number of extensions: 349179
Number of successful extensions: 783
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)