Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_D05
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 47 3e-06
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 28 1.3
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|... 28 1.7
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 27 2.2
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 27 3.9
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 6.8
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 6.8
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 26 6.8
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 25 9.0
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 25 9.0
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +2
Query: 245 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVN 358
VS+PGK IL GEH+VVYG TA+A ++ LRS ++ N
Sbjct: 7 VSSPGKTILFGEHAVVYGATALAAAVSLRSYCKLQTTN 44
Score = 33.1 bits (72), Expect = 0.045
Identities = 18/69 (26%), Positives = 37/69 (53%)
Frame = +3
Query: 546 LHLIKPNFDSLPNNQKNSLRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASF 725
L L++ + L N + + S + +F S P + +++ S++ +GAG GSSA+
Sbjct: 85 LDLLQGLGELLKNEENGLIHSAMLCTLYLFTSLSSPSQGCTLTISSQVPLGAGLGSSATI 144
Query: 726 AVCLXGALI 752
+V + +L+
Sbjct: 145 SVVVATSLL 153
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 450 ILNWHQGITGKFSWR-LPHKIDHDYHLRRVEEYLHLIK 560
++NWH + SWR + K D +L V Y HLI+
Sbjct: 453 LMNWHYKLPDTISWRTIDLKKDRIPNLCAVSLYYHLIR 490
>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 543 YLHLIKPNFDSLPN-NQKNSLRSFLYVFSGIF 635
+LH + NF P Q+N + SFLY FS +
Sbjct: 89 FLHAMAANFPKNPTPTQQNDMSSFLYNFSKFY 120
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 417 FHWSRQSKVCSILNWHQGIT--GKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPN 584
FHW+ C+ L + GKF + L +D+ + +E + PNFDS N
Sbjct: 37 FHWA-----CTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGN 89
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 434 LSAPMEWSPVDPRTANVCGLLVRVECLLPLSLW 336
L P+ DPR + L EC LP S+W
Sbjct: 179 LHRPLSAQSTDPRPTRIFVLGATKECSLPPSIW 211
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 399 WIYRRPFHWSRQSKVCSI-LNWHQGITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFD 572
W RR Q + +I ++W G G F+ PHKID + ++ ++I NF+
Sbjct: 1455 WKERRHLDQCLQQLLENIEISWLGGFKGIFN---PHKIDTSLFAKFSSQFQNIIAKNFN 1510
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 498 PHKIDHDYHLRRVEEYLH 551
P IDHD H++R+ E L+
Sbjct: 22 PDPIDHDLHVQRLRELLY 39
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +3
Query: 495 LPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNS 599
L K+ + + ++ L++P+ LPN KN+
Sbjct: 1790 LDQKLSYQFKFENSVKFFRLMQPSLGVLPNTNKNT 1824
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 471 SPGASLGWNRLLTVGSNGMVS 409
SP SLG R LTVG+N S
Sbjct: 515 SPTGSLGMRRSLTVGANASCS 535
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 516 DYHLRRVEEYLHLIKPNFDSLPNNQKNSLRSFLYVFSG 629
DY +LHL F+SLPN + R F+ G
Sbjct: 733 DYIALNHNVHLHLANMIFESLPNASEGKERKFMISLLG 770
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,454,913
Number of Sequences: 5004
Number of extensions: 79161
Number of successful extensions: 250
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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