Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D05
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006762-4|AAU20835.1|  484|Caenorhabditis elegans Hypothetical ...    55   6e-08
AC006762-3|AAU20834.1|  614|Caenorhabditis elegans Hypothetical ...    55   6e-08
AC006762-2|AAF60558.2|  607|Caenorhabditis elegans Hypothetical ...    55   6e-08
AC006762-1|AAU87813.1|  514|Caenorhabditis elegans Hypothetical ...    55   6e-08
AF078787-4|AAC26952.2|  274|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z70037-1|CAA93878.1|  493|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    28   6.4  

>AC006762-4|AAU20835.1|  484|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4c protein.
          Length = 484

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 28/66 (42%), Positives = 46/66 (69%)
 Frame = +2

Query: 245 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQETIPL 424
           VSAPGK+IL GEH+VVYG+TAIA S+ LR+ +    + T  +  +++ LP + +++T  L
Sbjct: 14  VSAPGKIILFGEHAVVYGRTAIAGSIDLRTYV---SLYTSADGRIYLSLPDLGVEKTWML 70

Query: 425 EPTVKS 442
           +  +K+
Sbjct: 71  KDLLKA 76


>AC006762-3|AAU20834.1|  614|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4b protein.
          Length = 614

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 28/66 (42%), Positives = 46/66 (69%)
 Frame = +2

Query: 245 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQETIPL 424
           VSAPGK+IL GEH+VVYG+TAIA S+ LR+ +    + T  +  +++ LP + +++T  L
Sbjct: 144 VSAPGKIILFGEHAVVYGRTAIAGSIDLRTYV---SLYTSADGRIYLSLPDLGVEKTWML 200

Query: 425 EPTVKS 442
           +  +K+
Sbjct: 201 KDLLKA 206


>AC006762-2|AAF60558.2|  607|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4a protein.
          Length = 607

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 28/66 (42%), Positives = 46/66 (69%)
 Frame = +2

Query: 245 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQETIPL 424
           VSAPGK+IL GEH+VVYG+TAIA S+ LR+ +    + T  +  +++ LP + +++T  L
Sbjct: 44  VSAPGKIILFGEHAVVYGRTAIAGSIDLRTYV---SLYTSADGRIYLSLPDLGVEKTWML 100

Query: 425 EPTVKS 442
           +  +K+
Sbjct: 101 KDLLKA 106


>AC006762-1|AAU87813.1|  514|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4d protein.
          Length = 514

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 28/66 (42%), Positives = 46/66 (69%)
 Frame = +2

Query: 245 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQETIPL 424
           VSAPGK+IL GEH+VVYG+TAIA S+ LR+ +    + T  +  +++ LP + +++T  L
Sbjct: 44  VSAPGKIILFGEHAVVYGRTAIAGSIDLRTYV---SLYTSADGRIYLSLPDLGVEKTWML 100

Query: 425 EPTVKS 442
           +  +K+
Sbjct: 101 KDLLKA 106


>AF078787-4|AAC26952.2|  274|Caenorhabditis elegans Hypothetical
           protein T17A3.6 protein.
          Length = 274

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +3

Query: 393 RAWIYRRPFHWSRQSKVCSI----LNWHQGITGKFSWRLPHKIDHDYHLRRVEEYLHLIK 560
           + + ++ P    R   VCSI    L +H+ I  K+S R  +K+  DYH  + +E+  ++ 
Sbjct: 85  KVFYWKPPGFTFRTVHVCSIFMEDLKFHRDILMKYS-RQFNKLTLDYHSLKSQEFHSILS 143

Query: 561 PNFDSLPNNQKNSLRSFL 614
            N+D     +   L   L
Sbjct: 144 LNYDRFCLEKATKLEDLL 161


>Z70037-1|CAA93878.1|  493|Caenorhabditis elegans Hypothetical
           protein T27D12.1 protein.
          Length = 493

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 537 PPFASDSHGRFCGVISKRICRLSPGASLG-WNRLLTVGSNGMV 412
           PPF   S    CG  S R+  LS G     +N L  VGS G +
Sbjct: 306 PPFLQFSSKLICGAASDRLTCLSEGVKFRLFNTLAFVGSAGFL 348


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +1

Query: 427 ADSQKSVPS*TGTRG*PANSLGDYPTKSTMTITCEGWRNTCI*SSLTLTRCPTIKRIPCV 606
           + S  S P+ T T G P+++LG   + S+  ++     +T   S+LTL++ PT    P V
Sbjct: 410 SSSPNSTPTTTITPGAPSSTLG---SSSSTIVSTTITPSTPKVSTLTLSQSPTPTSTPLV 466

Query: 607 VS 612
           VS
Sbjct: 467 VS 468


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,252,757
Number of Sequences: 27780
Number of extensions: 454007
Number of successful extensions: 1397
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)