Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D04
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           30   0.28 
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.9  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    25   7.8  

>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 7    ADDKPTGDRPRHCALAHSIYYSIFEFKF--NKITVYNSAKIIA 129
            A +K    R +  A+AH+ YY I ++ F  N I  Y  +KIIA
Sbjct: 900  ATEKLESIRKQDVAIAHNAYYIITDYDFDGNHIGYYKPSKIIA 942


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 314 AKWKTKQKLSCHLDNNVI*NSK 249
           AKW  K   S H+ + V+ NSK
Sbjct: 357 AKWNYKSSFSAHVSSEVLRNSK 378


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = +1

Query: 19  PTGD----RPRHCALAHSIYYSIFEFKFNKIT--VYNSAKIIAV 132
           P GD    RP H  + HS+ YSI E   +  T  ++ ++ I+ V
Sbjct: 296 PVGDCSDYRPTHETIKHSLTYSIVEVALSLFTFALFTNSSILIV 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,255
Number of Sequences: 5004
Number of extensions: 52331
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)