Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D02
         (550 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4QPP5 Cluster: AT01259p; n=4; Sophophora|Rep: AT01259p...    54   3e-06
UniRef50_Q177C8 Cluster: Aaa atpase; n=2; Culicidae|Rep: Aaa atp...    50   3e-05
UniRef50_Q2G4Z8 Cluster: MATE efflux family protein; n=2; Sphing...    34   2.5  
UniRef50_UPI00006A14CE Cluster: UPI00006A14CE related cluster; n...    33   5.8  

>UniRef50_Q4QPP5 Cluster: AT01259p; n=4; Sophophora|Rep: AT01259p -
           Drosophila melanogaster (Fruit fly)
          Length = 673

 Score = 53.6 bits (123), Expect = 3e-06
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
 Frame = +1

Query: 253 DLKIEFGFGMPLGAMSAHPAFHSAWDI----ACPSSGFHQMARMMDRMMVESLQPFGFAR 420
           ++++E+   +P      H  +HS WD+    + P +    MARMMD ++++SL PFGF +
Sbjct: 76  NVQVEYEVAVPFVPTYRHTPYHSLWDLHQCSSTPPTSLSHMARMMDSLILDSLSPFGFTK 135

Query: 421 MTARQR 438
           +TA  R
Sbjct: 136 ITATSR 141


>UniRef50_Q177C8 Cluster: Aaa atpase; n=2; Culicidae|Rep: Aaa atpase
           - Aedes aegypti (Yellowfever mosquito)
          Length = 624

 Score = 50.4 bits (115), Expect = 3e-05
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
 Frame = +1

Query: 247 RDDLKIEFGFGMPLGAMSA--HPAFHSAWDI-AC--PS-SGFHQMARMMDRMMVESLQPF 408
           R D+ +E+   +P+ ++ +  H  +HS W++  C  PS S F  MARMMD +++++L PF
Sbjct: 49  RSDVHVEYEVAVPIHSIESIRHTPYHSLWNLHECSQPSTSSFQHMARMMDTLILDNLAPF 108

Query: 409 GFARMTARQR 438
            F ++T   R
Sbjct: 109 AFTKITTTHR 118


>UniRef50_Q2G4Z8 Cluster: MATE efflux family protein; n=2;
           Sphingomonadaceae|Rep: MATE efflux family protein -
           Novosphingobium aromaticivorans (strain DSM 12444)
          Length = 481

 Score = 33.9 bits (74), Expect = 2.5
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 151 FFSLKGLVYYSKMMNDLKASTSEKEARGSWPRRDDLKIEFGFGMPLGA 294
           F S+ G+V Y     DL       E    WPRRD+L+     G+P+GA
Sbjct: 212 FVSMTGIVAYV-YAKDLPLRLKGAELAWLWPRRDELRYILTKGLPMGA 258


>UniRef50_UPI00006A14CE Cluster: UPI00006A14CE related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00006A14CE UniRef100 entry -
           Xenopus tropicalis
          Length = 223

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 424 TARQRGDTRDHQPPRDGLQTERPDTRKERAXN 519
           T   RG   DH+PPR G Q  RPD   +R  N
Sbjct: 39  TTGPRGQRPDHRPPRPGHQPLRPDLWPQRPDN 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 481,261,992
Number of Sequences: 1657284
Number of extensions: 8259059
Number of successful extensions: 23229
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23221
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)