Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D02
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    29   0.34 
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    25   5.6  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   7.3  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 335 AMSQAEWKAG*ALMAPRGIPNPNSILRSSLLGQEP 231
           A +Q   K G A++A R +P  NSIL  + L +EP
Sbjct: 160 AFTQVAEKLGLAILAWRSVPCDNSILGPAALSREP 194


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 547 YQWRHACWNDXSPAPSSCQGALSVDHHVEADDP 449
           Y W+ A   D    PS  Q ++ +D H + D P
Sbjct: 272 YSWKTA--KDLLELPSKSQSSIEIDWHEDDDTP 302


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 547 YQWRHACWNDXSPAPSSCQGALSVDH 470
           + W H   N  SP P S   ++ V+H
Sbjct: 337 FSWTHPKKNSSSPLPQSQSSSIFVEH 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,178
Number of Sequences: 5004
Number of extensions: 32079
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)