Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D02
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)               30   1.1  
SB_49065| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_23487| Best HMM Match : Calcipressin (HMM E-Value=0)                27   7.6  

>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
          Length = 1426

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 409 GFARMTARQRGDTRDHQPPRDGLQTERPD 495
           G  R ++R  GDTRD + PR GL     D
Sbjct: 881 GETRPSSRSEGDTRDRRTPRQGLAHNEDD 909


>SB_49065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/74 (22%), Positives = 36/74 (48%)
 Frame = +1

Query: 286 LGAMSAHPAFHSAWDIACPSSGFHQMARMMDRMMVESLQPFGFARMTARQRGDTRDHQPP 465
           L A S+ P   +   +A  SSGF +  + + RM+++ L+P     ++  ++ +   ++  
Sbjct: 25  LSASSSSPKLRATSSVA--SSGFLKEEKPLARMLIQILRPKRIMGISVTKKNNKELYRTR 82

Query: 466 RDGLQTERPDTRKE 507
            D +    P TR +
Sbjct: 83  NDPMTRNDPRTRND 96


>SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 660

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 442 DTRDHQPPRDGLQTERPDTRKERAXNHSNTHAATGT 549
           DTRD + PR   QTE P+T  +     S T ++T T
Sbjct: 175 DTRDPRHPRHSQQTETPET--QSTTETSETQSSTDT 208


>SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1473

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 352 FHQMAR-MMDRMMVESLQPFGFARMTARQRGDTRDHQPPRDGLQTERPDTRKERA 513
           +H+ +R MM     ESL   G A + A +  D      P  G QTER D R++ A
Sbjct: 799 YHRPSRTMMSDECFESLLEGGAADLPAVETLDCPTQAVPAAGEQTERADAREKLA 853


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 111 SRKRHANRRPSTLSTPSYGATEAAAASSDR 22
           SR R   R PST STPS  +T +   +S R
Sbjct: 211 SRSRSRARTPSTPSTPSTPSTPSTITTSSR 240


>SB_23487| Best HMM Match : Calcipressin (HMM E-Value=0)
          Length = 422

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 463 PRDGLQTERPDTRKERAXNHS 525
           PR+ +QT RPD + E+  +HS
Sbjct: 204 PRNVVQTRRPDKKSEKRQDHS 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,240
Number of Sequences: 59808
Number of extensions: 268887
Number of successful extensions: 604
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)