Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D02
         (550 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF064876-1|AAC39759.1|  749|Homo sapiens ion channel BCNG-1 prot...    31   2.0  
AF488549-1|AAO49469.1|  890|Homo sapiens hyperpolarization activ...    30   4.6  

>AF064876-1|AAC39759.1|  749|Homo sapiens ion channel BCNG-1
           protein.
          Length = 749

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 376 DRMMVESLQPFGFARMTARQRGDTRDHQPPRDGLQTERPDTRKERAXNHSNTHA 537
           DR MV+++ P  + +MT      T     P   ++T+ P      + +HSN H+
Sbjct: 508 DREMVQAIAPINYPQMTTLN--STSSTTTPTSRMRTQSPPVYTATSLSHSNLHS 559


>AF488549-1|AAO49469.1|  890|Homo sapiens hyperpolarization
           activated cyclic nucleotide-gated potassium channel
           protein.
          Length = 890

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 376 DRMMVESLQPFGFARMTARQRGDTRDHQPPRDGLQTERPDTRKERAXNHSNTHA 537
           DR MV+++ P  + +MT      +     P   ++T+ P      + +HSN H+
Sbjct: 629 DREMVQAIAPINYPQMTTLNSASSTT--TPTSRMRTQSPPVYTATSLSHSNLHS 680


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,568,892
Number of Sequences: 237096
Number of extensions: 1223579
Number of successful extensions: 6763
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6763
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)