Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D02
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024843-8|AAM48560.1|  726|Caenorhabditis elegans Hypothetical ...    30   1.3  
AC024843-7|AAF60843.2|  743|Caenorhabditis elegans Hypothetical ...    30   1.3  
AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical ...    30   1.3  

>AC024843-8|AAM48560.1|  726|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3c protein.
          Length = 726

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 415 ARMTARQRGDTRDHQPPRDGLQTERPDTRKERAXNHSNTHAA 540
           +R  +R RGD +DH+ P    +++R  T +ER  + S   AA
Sbjct: 143 SRSRSRDRGD-KDHRKPAASRRSDRESTYRERLGSSSGPAAA 183


>AC024843-7|AAF60843.2|  743|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3a protein.
          Length = 743

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 415 ARMTARQRGDTRDHQPPRDGLQTERPDTRKERAXNHSNTHAA 540
           +R  +R RGD +DH+ P    +++R  T +ER  + S   AA
Sbjct: 143 SRSRSRDRGD-KDHRKPAASRRSDRESTYRERLGSSSGPAAA 183


>AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3b protein.
          Length = 525

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 415 ARMTARQRGDTRDHQPPRDGLQTERPDTRKERAXNHSNTHAA 540
           +R  +R RGD +DH+ P    +++R  T +ER  + S   AA
Sbjct: 145 SRSRSRDRGD-KDHRKPAASRRSDRESTYRERLGSSSGPAAA 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,710,596
Number of Sequences: 27780
Number of extensions: 184349
Number of successful extensions: 455
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)