Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D02
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.38 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.67 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 283 PLGAMSAHPAFHSAWDIACPSSGFHQMARMMDRMMVE--SLQPFGFARMTARQRGDTRDH 456
           P G   A P+ + +  +  P+SG HQM +++ + ++    LQ F        Q+   + H
Sbjct: 48  PGGPPGAPPSQNPSQMMISPASGIHQMQQLLQQHILSPTQLQSFMQQHSLYLQQQQQQHH 107

Query: 457 Q 459
           Q
Sbjct: 108 Q 108


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 341  GQAMSQAEWKAG*ALMAPRGIPNPNSILRSSLLGQEPRASFS 216
            G A ++ + K      +P GIP PN I   S +   P   F+
Sbjct: 1118 GTADNKPQLKPQKPFTSPGGIPGPNGIKMPSFMEGMPHLPFT 1159


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 EKEARGSWPRRDDLKIEFGFGMPLGAMSA 303
           E+E   SW    D+ ++     PLG++S+
Sbjct: 467 EEEPAASWGSASDVTLDEAVKSPLGSVSS 495


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 313 FHSAWDIACPSSG-FHQMARMMDRMMVESLQPFGFARMTARQR 438
           F+ A D+ C +S  F+ +A  +DR +  + QP  +A+    +R
Sbjct: 261 FYIAMDVTCSTSSIFNLVAISIDRYIAVT-QPIKYAKHKNNRR 302


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 403 PFGFARMTARQRGDTRDHQPPRDG 474
           PFG  R+ +     ++D  PP DG
Sbjct: 337 PFGTPRIMSSFDFQSKDQGPPNDG 360


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 470  MVYRQSALTRGRSGRXIIPTRMPPL 544
            M  ++S   RGRS R  + T +PP+
Sbjct: 1832 MSEQKSLPRRGRSSRSSLRTLLPPI 1856


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 470  MVYRQSALTRGRSGRXIIPTRMPPL 544
            M  ++S   RGRS R  + T +PP+
Sbjct: 1828 MSEQKSLPRRGRSSRSSLRTLLPPI 1852


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,554
Number of Sequences: 438
Number of extensions: 2247
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)