Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D01
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   1.8  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.4  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   3.2  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   4.2  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   4.2  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   5.6  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   7.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.4  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 345  LFPGQGSQHVGMGKKLMHLPPV-RELYELA 431
            +F GQGSQ  GMG  L    PV R++++ A
Sbjct: 1684 VFTGQGSQEQGMGMDLYASSPVARKIWDSA 1713


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 240 ATEPELRWATQPYAVRPNEGDTNKARVEPSHTT 338
           ATEPE+   T+   ++ +EG +  +   PSH+T
Sbjct: 736 ATEPEVVDKTKVEKLKASEGKSTSSLSSPSHST 768


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 290  QRGRYEQGTCGALAHYRSAVSRPGL 364
            Q+GR +     +L H R+A+S PGL
Sbjct: 1191 QKGRIDNLQAQSLTHKRNAISYPGL 1215


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 99  SYRMMNTFARVSRGLKVARSCRTRSSRSEDTPLRRLLDEA-SAFNEGAATEPELRWATQP 275
           +Y + N + +  + L++A   + +S        R   ++A    NEG + E  ++ AT  
Sbjct: 526 AYNLANNYGKEEQLLQIATVMKDQSYIMHYWVQRENYEKALETLNEGVSQETLIQHATAL 585

Query: 276 YAVRPNE 296
              RPNE
Sbjct: 586 LTHRPNE 592


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 288 PNEGDTNKARVEPSHTTVLLFPGQG 362
           P++GD N+AR  P    ++   G+G
Sbjct: 129 PHDGDVNRARYMPQKPEIIATMGEG 153


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 248 FRCSTFIKSAGFVQQPSQRSIFTA 177
           F   +F K AG  ++P QRS+F+A
Sbjct: 593 FSFGSFNKPAGQEEKPQQRSLFSA 616


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +3

Query: 276 YAVRPNEGDTNKARVEPSHTTVLLFPGQGSQHVGMGKKLMHLPPVRELYELASXIV 443
           + + PN+    + R +  H   L+     ++ +   KKL  +PP  ++ ELA   +
Sbjct: 343 FVISPNDIVYVRERNQIDHVKYLVSKEMYAEAIDAVKKLPEIPPSLQISELAKKYI 398


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 144  KVARSCRTRSSRSE-DTPLRRLLDEASAFNEGAATE 248
            K A S R   ++SE D P+  +LD+   FN G  +E
Sbjct: 1246 KYAVSLRELCTKSEIDVPVSEILDDNFVFNAGNFSE 1281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,298
Number of Sequences: 5004
Number of extensions: 40834
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)