Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_D01
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530... 31 0.46
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 31 0.61
08_02_0100 + 12350498-12350538,12351216-12351717 31 0.81
12_01_0799 + 7329394-7330125 29 1.9
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771... 29 2.5
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034... 29 3.3
10_01_0274 - 2901033-2901778,2902475-2902634 28 4.3
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957... 28 4.3
03_05_0852 - 28241454-28241762 28 5.7
05_03_0393 + 13435581-13435745,13435804-13436418,13437283-134373... 27 7.5
>01_06_1684 +
39151412-39151702,39152410-39152548,39152926-39153040,
39153232-39153332,39153688-39153809,39153885-39153976,
39155288-39155393,39155477-39155631,39155904-39156031,
39156349-39156479,39157171-39157268,39157371-39158162,
39158472-39158523
Length = 773
Score = 31.5 bits (68), Expect = 0.46
Identities = 20/86 (23%), Positives = 39/86 (45%)
Frame = +3
Query: 156 SCRTRSSRSEDTPLRRLLDEASAFNEGAATEPELRWATQPYAVRPNEGDTNKARVEPSHT 335
+C S D P + ++A G ++E +L ++ Y + P+ D K ++P+
Sbjct: 626 NCMAASCSVLDVP--HFGEPSNACGNGKSSEDDLNECSREYRL-PHSNDGTKLSIDPNDL 682
Query: 336 TVLLFPGQGSQHVGMGKKLMHLPPVR 413
+ P S V + ++HL PV+
Sbjct: 683 RTISLPEGQSPEVYLPGLVIHLVPVK 708
>04_01_0084 -
912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 31.1 bits (67), Expect = 0.61
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 267 TQPYAVRPNEGDTNKARVEPSHTTVLLFPGQGSQHVGM--GKKLMHLPPVR 413
TQP+A R + ++ EPS +T + P GS HV + G KL+ +R
Sbjct: 9 TQPHASRKQQSVSSDVHTEPSTSTSIQQPCLGSVHVNLFHGWKLLRAHALR 59
>08_02_0100 + 12350498-12350538,12351216-12351717
Length = 180
Score = 30.7 bits (66), Expect = 0.81
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = -1
Query: 350 KQQNGSVRGLHTCLVRIALVGPHRIR----LSGPTQLRFRCSTFIKS-AGFVQQPSQRSI 186
++Q L CL+ +AL G HR++ LS P F+CS +S + + ++
Sbjct: 84 RRQRSEEENLALCLLMLALGGHHRVQAPPPLSAPVGAEFKCSVCGRSFSSYQALGGHKTS 143
Query: 185 FTARTPSPTTS 153
+ P+P S
Sbjct: 144 HRFKLPTPPAS 154
>12_01_0799 + 7329394-7330125
Length = 243
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 228 NEGAATEPELRWATQPYAVRPNEGDTNKARVEPSHTTVLL 347
N +AT P L QP A P DT+ +++ S+TT++L
Sbjct: 201 NMSSATSPSL----QPAAESPQSSDTSTSQIASSYTTLIL 236
>04_04_1580 -
34576595-34576723,34576905-34576981,34577058-34577104,
34577864-34577964,34578114-34578203,34578647-34578763,
34578835-34578992,34579562-34579843,34580367-34580667
Length = 433
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 321 PHVPCSYRPRWAAPHTAEWPNAAQVPLQHLH 229
P PCSY PR+ P +A +PLQH H
Sbjct: 68 PVAPCSYVPRYTMV-----PTSAMLPLQHHH 93
>09_04_0680 -
19401891-19402049,19402556-19402928,19403385-19403421,
19403587-19403667,19405215-19405280,19407453-19407948,
19408050-19408283,19408473-19408772,19409241-19409423,
19410412-19410414
Length = 643
Score = 28.7 bits (61), Expect = 3.3
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -1
Query: 482 FRSLSANSSHIPSNNXRG*FVEFSYWGQMH*FLAHSNMLRAL-AWKQQNGSVRGLHTCLV 306
+ + NSS + + N G VE +Y + LRAL ++ N + L +
Sbjct: 500 YAMVKTNSSPLLTINAFGCVVEAAYIAVYLVYAPRPARLRALTSFLLLNVAAFSLVVVVT 559
Query: 305 RIALVGPHRIRLSGPTQLRFRCSTFI 228
A+ PHR+R+ G L F + F+
Sbjct: 560 VAAVAQPHRVRVLGSICLAFSMAVFV 585
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 28.3 bits (60), Expect = 4.3
Identities = 28/90 (31%), Positives = 36/90 (40%)
Frame = +3
Query: 135 RGLKVARSCRTRSSRSEDTPLRRLLDEASAFNEGAATEPELRWATQPYAVRPNEGDTNKA 314
+GLKVA C+ SS ++ LD A AF A +LR A + D
Sbjct: 53 KGLKVAIKCKNGSSEEYESKAVGELDGAGAFAVPLAA--DLRGADCVAQLHSAATDAPCP 110
Query: 315 RVEPSHTTVLLFPGQGSQHVGMGKKLMHLP 404
EPS L G+ V + K HLP
Sbjct: 111 GQEPSKIEPLSSEGETGTFVAVAGK-THLP 139
>03_03_0105 +
14491198-14493636,14494793-14494957,14495647-14495760,
14496223-14496487,14497164-14497237,14497851-14497928
Length = 1044
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 290 GPHRIRLSGPTQLRFRCSTFIKSAGFVQQPSQRSIF 183
GP LSGP + F K AGF+ P + +F
Sbjct: 173 GPLNTFLSGPLERGFASGPLDKGAGFMSGPLDKGVF 208
>03_05_0852 - 28241454-28241762
Length = 102
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +3
Query: 138 GLKVARSCRTRSSRS-EDTPLRRL 206
GL VA SCRTRSS + E TP++ L
Sbjct: 39 GLSVAPSCRTRSSGTLEWTPVKTL 62
>05_03_0393 +
13435581-13435745,13435804-13436418,13437283-13437349,
13437605-13438239
Length = 493
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 284 AAQRGRYEQGTCGALAHYRSAVSRPGLATCWNGQETNASAPSKRTL 421
AAQ R C A+AH + +S T W Q T+ + +K TL
Sbjct: 123 AAQTQRSAPTLCLAVAHTFAYLSMASAPTAWRQQATHGAKLAKWTL 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,732,819
Number of Sequences: 37544
Number of extensions: 297987
Number of successful extensions: 917
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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