Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_D01
(551 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040642-2|AAN73874.2| 411|Caenorhabditis elegans Hypothetical ... 75 5e-14
U70857-8|AAB09173.2| 256|Caenorhabditis elegans C.elegans homeo... 28 3.9
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 28 3.9
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 28 3.9
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z81078-4|CAJ15165.1| 392|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical pr... 27 6.8
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 6.8
AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription... 27 6.8
>AF040642-2|AAN73874.2| 411|Caenorhabditis elegans Hypothetical
protein C50D2.9 protein.
Length = 411
Score = 74.5 bits (175), Expect = 5e-14
Identities = 32/73 (43%), Positives = 54/73 (73%), Gaps = 2/73 (2%)
Frame = +3
Query: 339 VLLFPGQGSQHVGMGKKLMHLPPVRELYELASXIVGWDVARVCTEGPEXELSR--HCXIA 512
VLLFPGQG+Q VGMG+K+M +P R +++ AS ++G+D+ +VC +GP+ +L + +C A
Sbjct: 95 VLLFPGQGAQFVGMGQKVMDIPAARRVFDEASEVLGYDMLKVCQDGPKQKLEQTLYCQPA 154
Query: 513 TLVTSLASLERLR 551
+ +S+A+ E L+
Sbjct: 155 IVTSSIAAFEALK 167
>U70857-8|AAB09173.2| 256|Caenorhabditis elegans C.elegans homeobox
protein 34 protein.
Length = 256
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 320 GALAHYRSAVSRPGLATCWNGQETN--ASAPSKRTLRISLXHC 442
GA+ YR P T W+G+ETN + S+ LR + C
Sbjct: 114 GAVCKYRIRKKNPFPNTIWDGEETNYCFKSKSRNVLRDAYKKC 156
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
trithorax-related protein LIN-59 protein.
Length = 1312
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 132 SRGLKVARSCRTRSSRSEDTPLRRLLDEASAFNEGAATEPE 254
+RG + C TRS+ S D L +E S G E E
Sbjct: 334 ARGTRTRNKCATRSTNSPDVTTSNLPEEPSTSTMGLVKENE 374
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 132 SRGLKVARSCRTRSSRSEDTPLRRLLDEASAFNEGAATEPE 254
+RG + C TRS+ S D L +E S G E E
Sbjct: 334 ARGTRTRNKCATRSTNSPDVTTSNLPEEPSTSTMGLVKENE 374
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
protein F32H2.5 protein.
Length = 2586
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Frame = +3
Query: 309 KARVEPSHTTVLLFPGQGSQHVGMGKKLMHLPPVRELYELASXIV---GWDV-ARVCTEG 476
K + + ++ G GSQ GM KLM +P + +S + G DV +C
Sbjct: 495 KVPITEARPIYFIYSGMGSQWPGMAIKLMKIPMFDDSLRASSKTLEEFGLDVYGMLCNPD 554
Query: 477 PE--XELSRHCXIATLVTSLA 533
PE + +C +A +A
Sbjct: 555 PEQYSNNTMNCMLAITAIQIA 575
>Z81078-4|CAJ15165.1| 392|Caenorhabditis elegans Hypothetical
protein F36H2.5 protein.
Length = 392
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 286 GPTRAIRTRHVWSPRTLPFC 345
G T AI T VWSP++L C
Sbjct: 55 GDTSAICTNGVWSPKSLAMC 74
>Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical
protein F52B5.5a protein.
Length = 644
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 302 YEQGTCGALAHYRSAVSRPGLATCWNGQETNASAPSKRTLRIS 430
+ QGT +L + + PG++T +NG N KRT +IS
Sbjct: 48 FSQGTEDSLE--KDILKTPGISTIYNGILGNGEETKKRTPKIS 88
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = -2
Query: 520 TNVAX*QCRLSSXSGPSVQTRATSHPTMXEANS*SSLTGGRCISFLPIPTCCEPWPGNSR 341
T VA + SS G S T + + A++ +S T S PIPTC P+ G
Sbjct: 1612 TTVATTVTQGSSTGGNSGST-TVNFQSSSVASTVASSTANIESSTTPIPTCASPYSGKIA 1670
Query: 340 TV 335
TV
Sbjct: 1671 TV 1672
>AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription
factor CEP-1 protein.
Length = 644
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 302 YEQGTCGALAHYRSAVSRPGLATCWNGQETNASAPSKRTLRIS 430
+ QGT +L + + PG++T +NG N KRT +IS
Sbjct: 48 FSQGTEDSLE--KDILKTPGISTIYNGILGNGEETKKRTPKIS 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,244,908
Number of Sequences: 27780
Number of extensions: 245705
Number of successful extensions: 596
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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